View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_30 (Length: 369)
Name: NF15978_low_30
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 40734118 - 40734459
Alignment:
| Q |
9 |
gataatactggaatcattacaaacaattaatgatgcgtnnnnnnnnctccgataccacatcttcatacaaaatattatgacatagattatatgtgtttgt |
108 |
Q |
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| T |
40734118 |
gataatactggaatcattacaaacaattaatgatgcgtaaaaaaa-ctctgataccacatcttcatacaaaatattatgacatagattatatgtgtttgt |
40734216 |
T |
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| Q |
109 |
tttttatatatcattcatttagcttgatcctttggactaacgtaagactaatcggtcacacttgaattccaacaccaccattcctcacctttgatattgg |
208 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40734217 |
tttttatatatcattcatttagcttgatcctttgaactcacgtaagactaatcggtcacacttgaattccaacaccaccatccctcacctttgatattgg |
40734316 |
T |
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| Q |
209 |
catcatctttaaaaagcagatgttgtaaaatgtaatggcgatagtcttttgcatgaattgacttggcatcactttaatttctttttggtcatagttattc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40734317 |
catcatctttaaaaagcagatgttgtaaaatgtaatggcgatagtcttttgcatgaattgacttggcatcactttaatttctttttggccatagttattc |
40734416 |
T |
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| Q |
309 |
caacaatgcaatcatacttttgtcatgaccttccatgcattac |
351 |
Q |
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| T |
40734417 |
caacaatgcaatcatacttttgtcatgaccttccatgcattac |
40734459 |
T |
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