View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_32 (Length: 366)
Name: NF15978_low_32
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 2551765 - 2551440
Alignment:
| Q |
18 |
aaacccgactttgttctctgattattcttacctttttggtgcttaattgtctttggatcataaacatgttttttgttgggtttgcattgaagcttgttct |
117 |
Q |
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| T |
2551765 |
aaacccgactttgttctctgattattcttacctttttggtgcttaattgtctttggatcataaacatgttttttgttgggtttgcattgaagcttgttct |
2551666 |
T |
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| Q |
118 |
ttagagaaacacaaaattcaagcattt---tttgtctttcttttctttatactcttgaaaaatattctannnnnnnnnnnnnnnnnntagaatatttttc |
214 |
Q |
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| T |
2551665 |
ttagagaaacacaaaattcaagcattttaatttgtctttcttttctttatactcttgaaaaatattctaatatatata----------agaatatttttc |
2551576 |
T |
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| Q |
215 |
aatgtattccaaatgcaaaggcaaggtaacaaataaggaatctatttttattttcatttacacggttacttcatatgcaagttttttgcaaataaattcc |
314 |
Q |
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| T |
2551575 |
aatgtattccaaatgcaaaggcaaggtaacaaataaggaatctatttttattttcatttacacggttacttcatatgcaagttttttgcaaataaattcc |
2551476 |
T |
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| Q |
315 |
atgtgtaacatgatatacattattcattgatttcat |
350 |
Q |
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| T |
2551475 |
atgtgtaacatgatatacattattcattgatttcat |
2551440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 2562663 - 2562572
Alignment:
| Q |
47 |
acctttttggtgcttaattgtctttggatcataaacatgttttttgttg-ggtttgcattgaagcttgttctttagagaaacacaaaattcaa |
138 |
Q |
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| T |
2562663 |
acctttttggtgcctaaatgtctttggatcatgaacttg-ttttggttgtggtttgcattgaagcttcctcttgaaagaaagacaaatttcaa |
2562572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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