View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_33 (Length: 363)
Name: NF15978_low_33
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 39037523 - 39037855
Alignment:
| Q |
16 |
actagtgtgtgctttcataggattgaagtcatttaattttaaaa-aatatatatgcatcaaactatatattaactttttcaaagcatattataaagttcc |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39037523 |
actagtgtgtgctttcataggattgaagtcgtttaattttaaaaaaatatatatgcatcaaactatatattaactttttcaaagcatattataaagttcc |
39037622 |
T |
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| Q |
115 |
agtttgattccttaagacatgtgtatggataaaacttagttggactttcattctcaaaatagatgttgagttcaattcaagtaaactttataattagtac |
214 |
Q |
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| T |
39037623 |
agtttgattccttaagacatgtgtatggataaaacttagttggactttcattctcaaaatagatgttgagttcaattcaagtaaactttataattagtac |
39037722 |
T |
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| Q |
215 |
gaggttattataagttttattaagattagcatgtataaaatttaatattagcatgctttcatttgagaatgaaaaacccttctcttccttaaacttcgat |
314 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39037723 |
gaggttattataagttttattaagattaacatgtataaaatttaagattagcatgctttcatttgagaatgaaaaacccttctcttccttaaacttcgat |
39037822 |
T |
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| Q |
315 |
tatcagaaagggaaagagaaagagagaaaatac |
347 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
39037823 |
tatcagaaagggaaagagaaagagagaaaatac |
39037855 |
T |
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