View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_34 (Length: 362)
Name: NF15978_low_34
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 342
Target Start/End: Original strand, 38482740 - 38483068
Alignment:
| Q |
14 |
atatcaaagaaaaagaacccatataatgtatcttagacataaaatgtagatacacgtgttaagtaacgcgccnnnnnnngtctatcatttcccgcgatga |
113 |
Q |
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| T |
38482740 |
atatcaaagaaaaagaacccatatactgtatcttagacataaaatgtagatacacgtgttaagtaacgcgcctttttttgtctatcatttcccgcgatga |
38482839 |
T |
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| Q |
114 |
ccgttactctcacaagaccacttctcattcttttctctctaactaactaaactaaccaacaacaaaatcataacacacagtcacactctctcttcccaac |
213 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
38482840 |
ccgttacactcacaagaccacttctcattcttttctctctaactaactaaactaaccaataacagaatcataacacacagtcacactctctcttcccaac |
38482939 |
T |
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| Q |
214 |
tccaatgacatgccaaccactcgcaccacctcggtcgcggccaagccctacaacatcctcccactccacaactccctcaacactgaccacccctccctcc |
313 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
38482940 |
tccaatgacatgccaaccactcgcaccacctccgtcgcggccaagccctacaacatcctcccactccacaactccctcaccactgaccacccttccctcc |
38483039 |
T |
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| Q |
314 |
gcttccccgaaatccgcgctgccttctcc |
342 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38483040 |
gcttccccgaaatccgcgctgccttctcc |
38483068 |
T |
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