View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_36 (Length: 361)
Name: NF15978_low_36
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 348
Target Start/End: Complemental strand, 29676980 - 29676652
Alignment:
| Q |
20 |
ccgagcctccttttacctcatccatctcaaacatgccacttccaaaggtgtatccaaggggaacataaagcataccatgatgagctaactgagttatagc |
119 |
Q |
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| T |
29676980 |
ccgagcctccttttacctcatccatctcaaacatgccacttccaaaggtgtatccaaggggaacataaagcataccatgatgagctaactgagttatagc |
29676881 |
T |
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| Q |
120 |
tgtccatctgcaaccatgacataaagaggaaactgaactaaaatcaagttgatatagcctatgaagcatgaacttcaacataaacacccgacacgacttg |
219 |
Q |
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| T |
29676880 |
tgtccatctgcaaccatgacataaagaggaaactgaactaaaatcaagttgatatagcatatgaagcatgaactccaacataaacacccgacacgacatg |
29676781 |
T |
|
| Q |
220 |
aacacagacacgtcgacactactaatgccaaaaacataagccacatacagacaccgatacataaaaaataaaccaaacattttatgattaaactactaac |
319 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29676780 |
aacacagacacgttgacactactaatgccaaaaacataaggcacatacagacaccgatacataaaaaataaaccaaatattttatgattaaactactaac |
29676681 |
T |
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| Q |
320 |
gagctcatgcgtttgcatagtcctgagaa |
348 |
Q |
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| T |
29676680 |
gagctcatgcgtttgcatagtcctgagaa |
29676652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 29689975 - 29689874
Alignment:
| Q |
23 |
agcctccttttacctcatccatctcaaacatgccacttccaaaggtgtatccaaggggaacataaagcataccatgatgagctaactgagttatagctgt |
122 |
Q |
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|||||| ||| || |||||||||||||| ||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||| |
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| T |
29689975 |
agcctcatttaacatcatccatctcaaaaatgccaccaccaaaggtgtatccaaggggaacaaaaaacacaccatgatgagctaactaagttatagctgt |
29689876 |
T |
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| Q |
123 |
cc |
124 |
Q |
| |
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|| |
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| T |
29689875 |
cc |
29689874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 29698146 - 29698055
Alignment:
| Q |
23 |
agcctccttttacctcatccatctcaaacatgccacttccaaaggtgtatccaaggggaacataaagcataccatgatgagctaactgagtt |
114 |
Q |
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|||||||||| ||||||| ||| | ||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
29698146 |
agcctcctttaacctcatacatataaaaaatgccactaccaaaggtgtatccaaggggaacaagaagcataccatgacaagctaactgagtt |
29698055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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