View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_38 (Length: 350)
Name: NF15978_low_38
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 5041611 - 5041292
Alignment:
| Q |
15 |
caaaggcacaagaaatgaaggaatcatcactgcagttcctaaagccaaaatgtaatgctgaaaacccagaattattgactccactgttcatagttcaaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5041611 |
caaaggcacaagaaatgaaggaatcatcactgcagttcctaaagccaaaatgtaatgctgaaaacccagaattattgactccactgttcatagttcaaaa |
5041512 |
T |
|
| Q |
115 |
catacataaaacactctcagtgaaaccaaaatggtcataactcataataaaataactatataaatagcaaaaaactcctatatagcatgaaccaaagagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5041511 |
catacataaaacactctcagtgaaaccaaaatggtcataactcataataaaataactatataaatagcaaaaaactcctatatagcatgaaccaaagagt |
5041412 |
T |
|
| Q |
215 |
cattatataatgaaaaaataagcagaaaaactttagcttaagaatgaaaatgcagatgagggaagtggatactaaccccaagaagggtttgcatctatgc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5041411 |
cattatataatgaaaaaataagcagaaaaactttagcttaagaatgaaaatgcagatgagggaagtggatactaaccccaagaagggtttgcatctatgc |
5041312 |
T |
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| Q |
315 |
agtactctatgccatgaagt |
334 |
Q |
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|||||||||||||||||||| |
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| T |
5041311 |
agtactctatgccatgaagt |
5041292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 35894557 - 35894458
Alignment:
| Q |
17 |
aaggcacaagaaatgaaggaatcatcactgcagttcctaaagccaaaatgtaatgctgaaaacccagaattattgactccactgttcatagttcaaaaca |
116 |
Q |
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|||| |||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| || | ||||| |||||||||| | | ||||||||| |
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| T |
35894557 |
aaggaacaagaaatgaaggaatcataactgcagttcctaatgccaaaatataatgttgaaaaccaagtagtattgtctccactgttaacaattcaaaaca |
35894458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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