View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_4 (Length: 642)
Name: NF15978_low_4
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 14 - 628
Target Start/End: Complemental strand, 29839945 - 29839330
Alignment:
| Q |
14 |
cagagagagtagtactatgtaggaagacataataaccaagtataacgacgcaaataactgagaggaaaagcgtataccttagcttcaacatatttccatt |
113 |
Q |
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| T |
29839945 |
cagagagagtagtactatgctggaagacataataaccaagtataacgacataaataactgagaggaaaagcgtataccttagcttcaacatatttccatt |
29839846 |
T |
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| Q |
114 |
tcacaagaaggtgatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctgtaaaacagaacaatgtaagtaatcaaatca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29839845 |
tcacaagaaggtgatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctgtaaaacagaacaatgtaagtaatcaaatca |
29839746 |
T |
|
| Q |
214 |
attttttctgaacaaatgcacacaagttaaagacataaaaagagcttattgaataaaaacaaacatatctaaggacaaaataaatgttatgacacaatgc |
313 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29839745 |
attttttctgaacaaatgcacacatgttaaagacataaaaagagcttattgaataaaaacaaacatatctaaggacaaaataaatgttatgacacaatgc |
29839646 |
T |
|
| Q |
314 |
agacctaaaaggaaacaagtcgaacatcccataagaaattttcgacataaggnnnnnnnncagtcaagtacggatctcatatcataagaaacaagttatc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
29839645 |
agacctaaaaggaaacaagtcgaacatcccataagaaattttcgacataagcaaaaaaaacagttaagtacggatctcatatcataagaaacaagttatc |
29839546 |
T |
|
| Q |
414 |
atacctgttgccaacatttcagcatctcacatgcaagtctacgcttcactgcaagagttgctttagcactatcaatcgccattccaatttgtatatctac |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29839545 |
atacctgttgccaacatttcagcatctcacatgcaagtctacgcttcactgcaagagttgctttagcactatcaatcgccattccaatttgtatatctac |
29839446 |
T |
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| Q |
514 |
accctgaagg-nnnnnnnnngtaaaggaaatcaataaacataaaatatggatgtgaacaaaactaatgatatctagtatctaaacattgagcattcccct |
612 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29839445 |
accctgaaggaaaaaaaaaagtaaaggaaatcaataaacataaaatatggatgtgaacaaaactaatgatatctagtatctaaacattgagcattcccct |
29839346 |
T |
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| Q |
613 |
tattctagtgaaagat |
628 |
Q |
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| T |
29839345 |
tattctagtgaaagat |
29839330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 415 - 518
Target Start/End: Original strand, 34625923 - 34626026
Alignment:
| Q |
415 |
tacctgttgccaacatttcagcatctcacatgcaagtctacgcttcactgcaagagttgctttagcactatcaatcgccattccaatttgtatatctaca |
514 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||| || || | |||||||| |||||||||| ||| ||||||||| |
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| T |
34625923 |
tacctgttgccaatatttcaccatctcacatgcaagtctacgcttcaccgcgagagtggccttggtgctatcaattgccattccaagttggatatctaca |
34626022 |
T |
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| Q |
515 |
ccct |
518 |
Q |
| |
|
|||| |
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| T |
34626023 |
ccct |
34626026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 34625322 - 34625379
Alignment:
| Q |
126 |
gatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctg |
183 |
Q |
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|||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||| |
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| T |
34625322 |
gatgtttttcaccccaaccattcgctaacggaagattcataatgttatcttgtgcctg |
34625379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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