View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_40 (Length: 344)
Name: NF15978_low_40
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 7535348 - 7535032
Alignment:
| Q |
13 |
aaaatcgtgctgggttgtataaccgaagggctagtggatcttatcgatataaacatgctagttcaaatagttcgtacaaaggcacactcgtagaagtact |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7535348 |
aaaatcgtgctgggttgtataaccgaagggctagtggatcttatcgatataaacatgctagttcaaatagttagtacaaaggcacactcgtagaagtact |
7535249 |
T |
|
| Q |
113 |
agatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7535248 |
agatagtttttgcagggatggtaaagtgaatgaagcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaa |
7535149 |
T |
|
| Q |
213 |
ttaatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7535148 |
ttaatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagaca |
7535049 |
T |
|
| Q |
313 |
atagagtattggagatg |
329 |
Q |
| |
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||||||||||||||||| |
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| T |
7535048 |
atagagtattggagatg |
7535032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 24 - 329
Target Start/End: Complemental strand, 7449796 - 7449494
Alignment:
| Q |
24 |
gggttgtataaccgaagggctagtggatcttatcgatataaacatgctagttcaaatagttcgtacaaaggcacactcgtagaagtactagatagttttt |
123 |
Q |
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||||||||||||| | ||| |||||||||||||| |||||| |||||||||| ||||| ||| || |||||||| | ||| ||||||||||||| |
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| T |
7449796 |
gggttgtataacctatgggaaagtggatcttatcgggataaacttgctagttcaggtagtttgtataacggcacacttgaggaa---ctagatagttttt |
7449700 |
T |
|
| Q |
124 |
gcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgt |
223 |
Q |
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||||||||||||||||||| ||| | ||||| | ||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||| | | |
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| T |
7449699 |
gcagggatggtaaagtgaaggaagcagttgaaaatttgcaaaagttggaaaagcttcatattcatgtggatttgcagcgttgtttgcaattaatgcgcat |
7449600 |
T |
|
| Q |
224 |
ttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaatagagtattg |
323 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7449599 |
ttgtgggaaggctaagtctcttgaggaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaatagagtattg |
7449500 |
T |
|
| Q |
324 |
gagatg |
329 |
Q |
| |
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|||||| |
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|
| T |
7449499 |
gagatg |
7449494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 329
Target Start/End: Complemental strand, 18664698 - 18664483
Alignment:
| Q |
114 |
gatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
213 |
Q |
| |
|
||||||| ||||| ||| ||| ||||||| ||| | |||| ||||||||||||| |||||| || |||||| | | |||||| | |||||||||| || |
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| T |
18664698 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcttgtagatttggatcgttgtttgcgat |
18664599 |
T |
|
| Q |
214 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaa |
313 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||| || |||||| ||| |
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| T |
18664598 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctcttaaagtcagcacatgcaa |
18664499 |
T |
|
| Q |
314 |
tagagtattggagatg |
329 |
Q |
| |
|
| || ||||||||||| |
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| T |
18664498 |
tggaatattggagatg |
18664483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 287
Target Start/End: Complemental strand, 18664955 - 18664825
Alignment:
| Q |
157 |
ttttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaag |
256 |
Q |
| |
|
||||||||| ||| ||||||||| ||| | || |||||||| | | |||||||| ||||||||| | ||||| ||| || ||| |||||||||||||| |
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|
| T |
18664955 |
ttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaa |
18664856 |
T |
|
| Q |
257 |
agttgtacacagacatgctttgcaacatttg |
287 |
Q |
| |
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||||||||||| | ||| ||| ||||||||| |
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| T |
18664855 |
agttgtacacatatatgttttacaacatttg |
18664825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 329
Target Start/End: Original strand, 15079130 - 15079345
Alignment:
| Q |
114 |
gatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
213 |
Q |
| |
|
||||||| ||||| ||| ||| ||||||| ||| | |||| ||||||||||||| |||||| || |||||||| | |||||| | ||||||||| || |
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| T |
15079130 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcatgtagatttggatcgttgtttgagat |
15079229 |
T |
|
| Q |
214 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaa |
313 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||| || |||||| ||| |
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| T |
15079230 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctcttaaagtcagcacatgcaa |
15079329 |
T |
|
| Q |
314 |
tagagtattggagatg |
329 |
Q |
| |
|
| || ||||||||||| |
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| T |
15079330 |
tggaatattggagatg |
15079345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 287
Target Start/End: Original strand, 15078873 - 15079003
Alignment:
| Q |
157 |
ttttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaag |
256 |
Q |
| |
|
||||||||| ||| ||||||||| ||| | || |||||||| | | |||||||| ||||||||| | ||||| ||| || ||| |||||||||||||| |
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|
| T |
15078873 |
ttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaa |
15078972 |
T |
|
| Q |
257 |
agttgtacacagacatgctttgcaacatttg |
287 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||| |
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|
| T |
15078973 |
agttgtacacagatatgttttacaacatttg |
15079003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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