View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_41 (Length: 342)
Name: NF15978_low_41
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 6860747 - 6860422
Alignment:
| Q |
1 |
aaaaatatatcagaaaatagtaaaccaaagtcatcactaaaacacaaaactaagcttggtcatcatactttggagattattttatgatatatacttgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6860747 |
aaaaatatatcagaaaatagtaaaccaaagtcatcactaaaacacaaaactaagcttggtcatcatactttggagattattttatgatatatacttgaat |
6860648 |
T |
|
| Q |
101 |
tgtcaaatgaaaaagtgataccatagatacagtttcttcaatcatagacgtcaatactatatctgaacaaatctataacaaataatcacactgcatgata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6860647 |
tgtcaaatgaaaaagtgataccatagatacagtttcttcaatcatagacgtcaatactatatctgaacaaatctataacaaataatcacactgcatgata |
6860548 |
T |
|
| Q |
201 |
ctgataagttgatcaattacctaaggagagatatcccagcattaaaaatgtttatccttttctattcatttttcatgaacatttaatatatctcttcaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6860547 |
ctgataagttgatcaattacctaaggagagatatcccagcattaaaaatgtttatccttttctattcatttttcatgaacatttaatatatctcttcaac |
6860448 |
T |
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| Q |
301 |
aaactttcattttatagtcattacat |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
6860447 |
aaactttcattttatagtcattacat |
6860422 |
T |
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