View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_43 (Length: 333)
Name: NF15978_low_43
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 4526315 - 4526029
Alignment:
| Q |
16 |
attttttgttatattttattttcaagagagtatcaaccaattaacatttcatttttctctgataccagatatacgtcaatgaattaaaatcattcgatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4526315 |
attttttgttatattttattttcaagagagtatcaaccaattaacatttcatttttctctgataccagatatacgtcaatgaattaaaatcattcgatgt |
4526216 |
T |
|
| Q |
116 |
cggtaaagatcctgagcttttctttgatgttgtatttgaggagggtggtgcaaacaaagtaaattactcagcttaaaatctataatttctcatccggtct |
215 |
Q |
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||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4526215 |
cggtaaagatcctgacctattctctgatgttgtatttgaggagggtggtgcaaacaaagtaaattactaagcttaaaatctataatttctcatccggtct |
4526116 |
T |
|
| Q |
216 |
tgatttttgggtgtgtggattttaaaatgttgtgtctaaccaattgacgctcaaaatctagaatttctctcgtggttttaatttttg |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4526115 |
tgatttttgggtgtgtggattttaaaatgttgtgtctaaccaattgacgctcaaaatctagaatttctctcgtggttttaatttttg |
4526029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 4527275 - 4527578
Alignment:
| Q |
12 |
atcaattttttgttatattttattttcaagagagtatcaaccaattaacatttcatttttctctgataccagatatacgtcaatgaattaaaatcattcg |
111 |
Q |
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||||||||||| |||||||||||| |||||||||||| ||| |||||||||||||||| ||| |||||||| ||||| |||||||||||||||||||| | |
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| T |
4527275 |
atcaattttttcttatattttattctcaagagagtatgaac-aattaacatttcatttctctttgataccatatatatgtcaatgaattaaaatcattag |
4527373 |
T |
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| Q |
112 |
atgtcggtaaagatcctgagcttttctttgatgttgtatttgaggagggtggtgcaaacaaagtaaattactcagcttaaaatctataatttctcatccg |
211 |
Q |
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| T |
4527374 |
atgctggtaaagatactgagtttttcgcagatgttgtatttgaggagggcggtgcaaacaaagtaaattactcagcttaaaatctagaatttttcttgtg |
4527473 |
T |
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| Q |
212 |
gtcttgatttttgggtgtgtggattttaaaatg---ttgtgtctaaccaattgacgctcaaaatctagaatttctctcgtggttttaatttttgtgtgtg |
308 |
Q |
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| T |
4527474 |
gtattgattttaaggtgtgtttattttaaaatggttttgtgtttaaccaattcacgctcaaaatctagaatttctctggtggttttaatttttgtgtctg |
4527573 |
T |
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| Q |
309 |
tggat |
313 |
Q |
| |
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||||| |
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| T |
4527574 |
tggat |
4527578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 4536083 - 4535769
Alignment:
| Q |
12 |
atcaattttttgttatattttattttcaagagagtatcaaccaattaacatttcatttttctctgataccagatatac-------------gtcaatgaa |
98 |
Q |
| |
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||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
4536083 |
atcaattttttcttatattttattcacaagagaatatcaactaattaacatttcatttttctctgataccagatatacataccagatatacgttaatgaa |
4535984 |
T |
|
| Q |
99 |
ttaaaatcattcgatgtcggtaaagatcctgagcttttctttgatgttgtatttgaggagggtggtgcaaacaaagtaaattactcagcttaaaatctat |
198 |
Q |
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|||| |||||| ||| ||||||||||| ||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
4535983 |
ttaagatcattagatactggtaaagatccagagcttttcacagatgttatatttgaggaggatagtgcaaacaaagtaaattactcagcttaaaatctag |
4535884 |
T |
|
| Q |
199 |
aatttctcatccggtcttgatttttgggtgtgtggattttaaaatg---ttgtgtctaaccaattgacgctcaaaatctagaatttctctcgtggtttta |
295 |
Q |
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|||||||||| ||| ||||||||| | |||||||||||||||||| |||||| ||||||||| ||||| |||||||||||||||||| ||| ||||| |
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| T |
4535883 |
aatttctcatttggtattgattttttgatgtgtggattttaaaatgtttttgtgtttaaccaattcacgcttaaaatctagaatttctcttgtgatttta |
4535784 |
T |
|
| Q |
296 |
atttttgtgtgtgtg |
310 |
Q |
| |
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||||||| ||||||| |
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| T |
4535783 |
atttttgcgtgtgtg |
4535769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 128 - 313
Target Start/End: Original strand, 4537048 - 4537234
Alignment:
| Q |
128 |
tgagcttttctttgatgttgtatttgaggagggtggtgcaaacaaagtaaattactcagcttaaaatctataatttctcatccggtcttgatttttgggt |
227 |
Q |
| |
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||||||||| | |||||||||||||||||||| |||||||||||| ||||||||| || ||||||| || ||||| || | | || ||||||||||||| |
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| T |
4537048 |
tgagctttttgtagatgttgtatttgaggagggcggtgcaaacaaattaaattactaagtttaaaatatagaatttatcttgcagtattgatttttgggt |
4537147 |
T |
|
| Q |
228 |
gtgtggattttaaaatg-ttgtgtctaaccaattgacgctcaaaatctagaatttctctcgtggttttaatttttgtgtgtgtggat |
313 |
Q |
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||||||||||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4537148 |
gtgtggattttaaaatgtttgtgtttaaccaattcacattcaaaatctagaatttctctcgtggttttaaattttgtgtgtgtggat |
4537234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 283
Target Start/End: Original strand, 19411346 - 19411606
Alignment:
| Q |
29 |
ttttattttcaagagagtatcaaccaattaacatttcattttt--ctctgataccagatatacgtcaatgaattaaaatcattcgatgtcggtaaagatc |
126 |
Q |
| |
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||||||||| | |||||||| | |||| ||||||||||||| |||||||||||| |||| ||||||||||| |||||| | || || |||||||||| |
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| T |
19411346 |
ttttattttggatagagtatcgaataattgacatttcatttttttctctgataccagttatatgtcaatgaattgaaatcaatagaagtgggtaaagatc |
19411445 |
T |
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| Q |
127 |
ctgagctt---ttctttgatgttgtatttgaggagggtggtgcaaacaaagtaaattactcagcttaaaatctataatttctcatccggtcttgattttt |
223 |
Q |
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|||||| | | | ||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |||| |||||||| | ||| || ||||| |
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| T |
19411446 |
ctgagcatgcttccactgatgttgtatttgaggagggtggtgcaaacaaagtaaa-tact-tgctcaaactctacaatttctcttgtggtattatttttt |
19411543 |
T |
|
| Q |
224 |
gggtgtgtggattttaaaatg---ttgtgtctaaccaattgacgctcaaaatctagaatttct |
283 |
Q |
| |
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| T |
19411544 |
ggatgtgtggattttaatatgtatttgtgtttaacccattcacactcaaaatctggaatttct |
19411606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 313
Target Start/End: Original strand, 4292644 - 4292771
Alignment:
| Q |
188 |
ttaaaatctataatttctcatccggtcttgatttttgggtgtgtggattttaaaatg---ttgtgtctaaccaattgacgctcaaaatctagaatttctc |
284 |
Q |
| |
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|||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| | | ||||| |||||||||||| |||||||| |
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| T |
4292644 |
ttaacatctagaatttctcatgtggtcttgatttttgggtgtgtggattttaaaatgtttttgtgt-ttatcaattcgcgctcaaaatctctaatttctc |
4292742 |
T |
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| Q |
285 |
tcgtggttttaatttttgtgtgtgtggat |
313 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
4292743 |
tcgtggttttaatttttgtgtgtgtggat |
4292771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 4536982 - 4537022
Alignment:
| Q |
15 |
aattttttgttatattttattttcaagagagtatcaaccaa |
55 |
Q |
| |
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|||||||| ||||||| |||| ||||||||||||||||||| |
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| T |
4536982 |
aattttttcttatattatattctcaagagagtatcaaccaa |
4537022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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