View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_46 (Length: 316)
Name: NF15978_low_46
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 9385213 - 9384914
Alignment:
| Q |
1 |
agcattgaaaacagtgtttcttcttatgaaaatttcagaaagaaggcaaagaagaaaatttcataccaacttttggagctaaagaaaatgcagaacaaag |
100 |
Q |
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| T |
9385213 |
agcattgaaaacagtgtttcttcttatgaaaatttcagaaagaaggcaaggaagaaaatttcataccaacttttggagctaaagaaaatgcagaacaaag |
9385114 |
T |
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| Q |
101 |
ttaactcattttctctttgtgatcaagatcaacaactagcatttttggttagagttttaagagaagtgaacacaatcactatatctatattaagttctgt |
200 |
Q |
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| T |
9385113 |
ttaactcattttctctttgtgatcaagatcaacaactagcatttttggttagagttttaagagaagtgaacacaatcactatatctatattaagttctgt |
9385014 |
T |
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| Q |
201 |
actac-nnnnnnnnctatgccagcacttggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaagaagggaag |
299 |
Q |
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| T |
9385013 |
actactttttttttctatgccagcacttggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaagaagggaag |
9384914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 292
Target Start/End: Complemental strand, 31948271 - 31948006
Alignment:
| Q |
28 |
gaaaatttcagaaagaaggcaaagaagaaaatttcataccaacttttggagctaaagaaaatgcagaacaaagttaactcattttctctttgtgatcaag |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31948271 |
gaaaatttcagaaagaaggcaaagaagaaaatttcataccaatttttggagctaaagaaaatgcagagcaaagttaactcattttctctttgtgatcaag |
31948172 |
T |
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| Q |
128 |
atcaacaactagcatttttggttagagttttaagagaagtgaacacaatcactatatctatattaagttctgtactac-nnnnnnnnctatgccagcact |
226 |
Q |
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| T |
31948171 |
atcaacaactagcatttttggttagggttttaagagaagtaaacacaatcactatatctatattaagttttgtgctactttttttgtctatgccagcact |
31948072 |
T |
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| Q |
227 |
tggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaaga |
292 |
Q |
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| T |
31948071 |
tggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaaga |
31948006 |
T |
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