View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15978_low_47 (Length: 313)
Name: NF15978_low_47
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_47 |
 | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
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|
| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: scaffold0552 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 8640 - 8361
Alignment:
| Q |
16 |
ctgttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttg |
115 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8640 |
ctgttgtgcttttcttttcctgcagatactagagaatctaaaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttg |
8541 |
T |
|
| Q |
116 |
ccgaatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagag |
215 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||| || |
|
|
| T |
8540 |
ccaaatcttgaaaagctagtactcaaaaattgtccaagtttgtctacagtctcccatagtattggatctctacataaaattcttctcataaatttgacag |
8441 |
T |
|
| Q |
216 |
actgcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8440 |
actgcacaggtcttcggaaacttccaagaagcaactataaattaaaatctctagaaactttgattctttctggatgttcc |
8361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 21)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 6815196 - 6815475
Alignment:
| Q |
16 |
ctgttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttg |
115 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6815196 |
ctgttgtgcttttcttttcctgcagatactagagaatctaaaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttg |
6815295 |
T |
|
| Q |
116 |
ccgaatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagag |
215 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||| || |
|
|
| T |
6815296 |
ccaaatcttgaaaagctagtactcaaaaattgtccaagtttgtctacagtctcccatagtattggatctctacataaaattcttctcataaatttgacag |
6815395 |
T |
|
| Q |
216 |
actgcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6815396 |
actgcacaggtcttcggaaacttccaagaagcaactataaattaaaatctctagaaactttgattctttctggatgttcc |
6815475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 6796516 - 6796789
Alignment:
| Q |
19 |
ttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccg |
118 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| || |
|
|
| T |
6796516 |
ttgtggttttattttcctacagatactacagaatctaaaaattcttaatcttagtcattccctggatttgactgaaaccccagactttacatacttacca |
6796615 |
T |
|
| Q |
119 |
aatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagact |
218 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
6796616 |
aatcttgaaaagctagtactaaaaaattgtccaagtttgtctacggtctcccatagcattggatctctacataaaattcttctcataaatttgacagact |
6796715 |
T |
|
| Q |
219 |
gcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgt |
292 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6796716 |
gcataggtcttcggaaacttccaagaagcatctatacattaaaatctctagaaactttgattctttctggatgt |
6796789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 36 - 252
Target Start/End: Original strand, 6772850 - 6773066
Alignment:
| Q |
36 |
tgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagt |
135 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6772850 |
tgcagatgctagagaatctaaaaattcttaatcttagtcattcccatgatttgaccgaaaccccagacttttcatacttgccgaatcttgaaaagctagt |
6772949 |
T |
|
| Q |
136 |
actcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgcataggtcttcggaag |
235 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6772950 |
actcaagaattgtccaagtttgtctacgctctcccatagcattggatctctacatgaaatttttctcataaatttgagagactgcataggtcttcggaag |
6773049 |
T |
|
| Q |
236 |
cttccaagaagcatcta |
252 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6773050 |
cttccaagaagcatcta |
6773066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 36 - 295
Target Start/End: Original strand, 6728152 - 6728411
Alignment:
| Q |
36 |
tgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagt |
135 |
Q |
| |
|
||||||| ||| | |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | ||||| || |||||||||||||| || |
|
|
| T |
6728152 |
tgcagatgctaaaaaatctaaaaattcttaatcttagtcattctctggatttgactgaaaccccagacttttcctacttacctaatcttgaaaagctcgt |
6728251 |
T |
|
| Q |
136 |
actcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgcataggtcttcggaag |
235 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6728252 |
gctcaaaaactgtccaagtttgtctacggtctcccaaagcattggatctctacaaaaaattcttctgataaatttgagagactgcgcaggtcttcggaaa |
6728351 |
T |
|
| Q |
236 |
cttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6728352 |
cttccaagaaacatctacaagttaaaatctctagaaactttgattctttcaggatgttcc |
6728411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 6621859 - 6621583
Alignment:
| Q |
19 |
ttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccg |
118 |
Q |
| |
|
||||||||||| |||| ||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
6621859 |
ttgtggttttattttcttgcagatgctaaagaatctaaaaattcttaatcttagtcattctttggatttgactgaaaccccagatttttcatacatgcct |
6621760 |
T |
|
| Q |
119 |
aatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagact |
218 |
Q |
| |
|
||||| ||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||||| |||||| || | || |||||||||| ||||| |
|
|
| T |
6621759 |
aatctcgaaaagctagtgctcaaagactgtccaagtttgtctacagtctcccatagcattggatctctccataaacttctccttataaatttgacagact |
6621660 |
T |
|
| Q |
219 |
gcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6621659 |
gcatacgtcttcgtaaacttccaagaagcatctataaattaaaatctctagaaactttaattctttcaggatgttcc |
6621583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 6588557 - 6588273
Alignment:
| Q |
10 |
attatactgttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttaca |
109 |
Q |
| |
|
||||| || ||||| ||||| |||| ||||||| || || |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | |
|
|
| T |
6588557 |
attattctcttgtgcttttattttcttgcagatgcttgaaaatctaaaaattcttaatcttagtcattctctagatttgactgaaaccccagacttttcc |
6588458 |
T |
|
| Q |
110 |
tacttgccgaatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatt |
209 |
Q |
| |
|
||||| || |||||||||||||| || || || || |||||||||||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
6588457 |
tacttacctaatcttgaaaagcttgtgctaaaaaactgtccaagtttgtccacggtctcccatagcattggatctctacataaacttattttgataaatt |
6588358 |
T |
|
| Q |
210 |
tgagagactgcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttc |
294 |
Q |
| |
|
|||||| ||||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
6588357 |
tgagaggctgcacaggtcttcggaaactcccaagaagcatctataaattaaaatcgttagaaactttgattctttctggatgttc |
6588273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 6545800 - 6545524
Alignment:
| Q |
19 |
ttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccg |
118 |
Q |
| |
|
||||||||||| | || | ||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||| |||| |
|
|
| T |
6545800 |
ttgtggttttattctcttacagatgctagagaatctaaaaattcttaatctcagtcattctttgaatttgactgaaaccccagacttttcatatatgcct |
6545701 |
T |
|
| Q |
119 |
aatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagact |
218 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||| |||||||||| ||||| |
|
|
| T |
6545700 |
aatcttgaaaagatagtactcaaaggctgtccaagtttgtctacagtctcccatagcattggatctctacataaacttcttctaataaatttgacagact |
6545601 |
T |
|
| Q |
219 |
gcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
||| ||||||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6545600 |
gcacaggtcttcgaaaacttccgaaaagcatctataaattaaaatctctagaaactttgattctttcgggatgttcc |
6545524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 6715496 - 6715771
Alignment:
| Q |
19 |
ttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccg |
118 |
Q |
| |
|
||||||||||| |||| ||||||| ||||||||||||||| |||||||||| || ||||||| |||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
6715496 |
ttgtggttttattttcttgcagatgctagagaatctaaaagttcttaatctcagccattctcttgatttgactgaaacaccagacttttcatacatgcca |
6715595 |
T |
|
| Q |
119 |
aatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagact |
218 |
Q |
| |
|
|||||||||||||| ||||| | | |||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
6715596 |
aatcttgaaaagcttatactcgaagactgtccaagtttgtctacggtctcccatagcattggatctctgcataaaattcttctgataaatttgacagact |
6715695 |
T |
|
| Q |
219 |
gcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttc |
294 |
Q |
| |
|
||| ||||||||||| ||||| | |||||||||||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
6715696 |
gcacaggtcttcggacacttccgaaaagcatctataaattaaaatctcttgcaactttgattctttctggatgttc |
6715771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 6837003 - 6837279
Alignment:
| Q |
19 |
ttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccg |
118 |
Q |
| |
|
||||||||||| |||| ||||||| ||| |||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
6837003 |
ttgtggttttattttcttgcagatgctaaagaacttaaaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccg |
6837102 |
T |
|
| Q |
119 |
aatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagact |
218 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |||||| || ||||||||||||| | ||| |
|
|
| T |
6837103 |
aatcttgaaaagctagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccataaacttcttctgataaatttaacgaact |
6837202 |
T |
|
| Q |
219 |
gcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
||| |||||||||||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
6837203 |
gcacaggtcttcggaaacttccgagaagcatctatacattaaaatctctacaaactttgattctttctggatgttcc |
6837279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 6650798 - 6651072
Alignment:
| Q |
21 |
gtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaa |
120 |
Q |
| |
|
||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| | |||| || |
|
|
| T |
6650798 |
gtggttttattttcttgcagttgctagagaatctaaaaattcttaatctgagtcattcttgggatttgattgaaaccccagacttttcattcatgcctaa |
6650897 |
T |
|
| Q |
121 |
tcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgc |
220 |
Q |
| |
|
||||||||||||||||||||| | |||||||| || || |||||||| ||||||||||||||| |||||| || |||| |||||||||| ||||||| |
|
|
| T |
6650898 |
tcttgaaaagctagtactcaaagactgtccaagattaactgcggtctcccgtagcattggatctctgcataaacttcttctaataaatttgacagactgc |
6650997 |
T |
|
| Q |
221 |
ataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
| | |||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6650998 |
acaagtcttcagaaacttcctagaagcatatataaattaaaatctctagaaactttgattctttctggatgttcc |
6651072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 6498878 - 6498602
Alignment:
| Q |
19 |
ttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccg |
118 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||| |||||||||||||| |||||||||| | |||||| |||||||||||||||||| |||||||| |
|
|
| T |
6498878 |
ttgtggttttgttttcttgcagatgctagagaatcttaaaattcttaatcttagtcattctcagaatttgattgaaaccccagactttacgtacttgcct |
6498779 |
T |
|
| Q |
119 |
aatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagact |
218 |
Q |
| |
|
||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||| || | |||| ||||||| |||| |
|
|
| T |
6498778 |
aatattgaaaagctagtactcaaagactgtccaagtttgtctacggtctcccatagcattggatctctctgtaaacttctaatgattaatttgacggact |
6498679 |
T |
|
| Q |
219 |
gcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6498678 |
gcactggtcttcaaaaccttccgagaagcatctataaattaaaatctctagaaactttgattctttctggatgttcc |
6498602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 6532584 - 6532308
Alignment:
| Q |
19 |
ttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccg |
118 |
Q |
| |
|
||||||||||| |||| ||||||| |||||| ||||| |||||||||||| |||||||||| ||||||||||||||||| ||||| |||| |||| |
|
|
| T |
6532584 |
ttgtggttttattttcttgcagatggtagagagtctaacaattcttaatcttagtcattctctacatttgactgaaaccccaaacttttcatatatgcct |
6532485 |
T |
|
| Q |
119 |
aatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagact |
218 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||||||| || ||| || ||||||||||||||| ||||| |
|
|
| T |
6532484 |
aatcttgaaaagttagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccaaaaacttcttctgataaatttgacagact |
6532385 |
T |
|
| Q |
219 |
gcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
||| |||||||| || |||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6532384 |
gcacaggtcttcaaaaaattccaagaagtatttataaattaaaatctctagaaaccttgattctttcaggatgttcc |
6532308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 291
Target Start/End: Original strand, 6758459 - 6758725
Alignment:
| Q |
25 |
ttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatctt |
124 |
Q |
| |
|
||||| |||| |||||| ||||||||||| |||||||||||||| |||||||||| |||||||||| ||| |||||||||| | ||||| || |||||| |
|
|
| T |
6758459 |
ttttattttcttgcagaagctagagaatctgaaaattcttaatcttagtcattctctggatttgactaaaagcccagacttttcctactttcctaatctt |
6758558 |
T |
|
| Q |
125 |
gaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgcatag |
224 |
Q |
| |
|
|||||||| || ||||| || |||||||||||| | | |||| | ||||||||||||| ||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
6758559 |
gaaaagctggtgctcaaaaactgtccaagtttgaccacagtctgcaatagcattggatcactacataaacttcttctgataaatttgacagactgcatag |
6758658 |
T |
|
| Q |
225 |
gtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatg |
291 |
Q |
| |
|
||||| |||| ||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6758659 |
gtcttaggaaacttccgagaagcatctaaacattaaaatctctagaaactttgattctctcaggatg |
6758725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 6752691 - 6752965
Alignment:
| Q |
21 |
gtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaa |
120 |
Q |
| |
|
||||||||| |||| ||||||| ||| || |||||||||||||||| |||||||||| ||||||||| ||||| ||||||||| |||| |||| || |
|
|
| T |
6752691 |
gtggttttattttcttgcagatgctaagtaacttaaaaattcttaatcttagtcattctcaggatttgaccgaaactccagacttttcatatatgcctaa |
6752790 |
T |
|
| Q |
121 |
tcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgc |
220 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||| ||||||| |
|
|
| T |
6752791 |
tcttgaaaagcttgtactcaaagactgtccaagtttgtctacagtctcccatagcattggatctctacataatcttcttctgatagatttgacagactgc |
6752890 |
T |
|
| Q |
221 |
ataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
| |||||| ||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6752891 |
acgagtcttcagaaacttcctagatgcatatataaattaaaatctctagaaactttgattctttctggatgttcc |
6752965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 47 - 295
Target Start/End: Original strand, 6675460 - 6675708
Alignment:
| Q |
47 |
gagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaatt |
146 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||| ||| |||||||||| || ||||| | | |
|
|
| T |
6675460 |
gagaatctaaaaattcttaatcttagtcattctcaaaatttggctgaaaccccagacttttcatacttgcccaatattgaaaagctggtgctcaaagact |
6675559 |
T |
|
| Q |
147 |
gtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgcataggtcttcggaagcttccaagaag |
246 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||| || || |||||||||||| ||||||| ||||||| || ||||| ||||| |
|
|
| T |
6675560 |
gtccaagtttgtctacggtctcccatagcattggatctctccataagcttcttatgataaatttgacggactgcactggtcttcaaaaacttccgagaag |
6675659 |
T |
|
| Q |
247 |
catctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6675660 |
catttgcaaattaaaatctctagaaactttgattctttctggatgttcc |
6675708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 6822607 - 6822693
Alignment:
| Q |
207 |
atttgagagactgcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgtt |
293 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||| |||| |||| ||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6822607 |
atttgacagactgcaccggtcttcggaaacttccgagaatcatcaataaaataaaatctctagaaactttgattctttctggatgtt |
6822693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 294
Target Start/End: Original strand, 4360843 - 4361081
Alignment:
| Q |
56 |
aaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaagtt |
155 |
Q |
| |
|
|||||||| ||||| |||||||||| || |||| | || || |||||| |||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
4360843 |
aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaaggc |
4360942 |
T |
|
| Q |
156 |
tgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgcataggtcttcggaagcttccaagaagcatctataa |
255 |
Q |
| |
|
||||| | | ||||| || |||||| ||| | |||||| || |||||||||||| ||| ||||| | ||| | || |||||||||| |||||||| |
|
|
| T |
4360943 |
tgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatac |
4361042 |
T |
|
| Q |
256 |
attaaaatctctagaaactttgattctttcaggatgttc |
294 |
Q |
| |
|
|| |||||||| ||||| | ||||| || |||||||| |
|
|
| T |
4361043 |
gttgaaatctctgaaaactctcattctatctggatgttc |
4361081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 181
Target Start/End: Complemental strand, 4320931 - 4320809
Alignment:
| Q |
59 |
attcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaagtttgt |
158 |
Q |
| |
|
||||| ||||| |||||||||| ||||||| | ||||| |||||| |||||||||| ||||||||||||||||| ||| | |||| ||||| ||| |
|
|
| T |
4320931 |
attctaaatcttagtcattctcatcatttgacacagacccctgacttttcatacttgcctaatcttgaaaagctagtgctcgaagattgcccaaggctgt |
4320832 |
T |
|
| Q |
159 |
ctatggtctcccatagcattgga |
181 |
Q |
| |
|
|| ||| ||||||||||||||| |
|
|
| T |
4320831 |
ctcaggtttcccatagcattgga |
4320809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 4344457 - 4344509
Alignment:
| Q |
101 |
gactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaag |
153 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
4344457 |
gacttttcatacttgcctaatcttgaaaagctagtactcaaagattgtccaag |
4344509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 293
Target Start/End: Original strand, 4335150 - 4335348
Alignment:
| Q |
95 |
accccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaa |
194 |
Q |
| |
|
||||| || ||| |||||||||| ||||||||||| ||||||||||| ||||||| || ||||| ||| ||||||| |||||| ||| | ||| |
|
|
| T |
4335150 |
acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaag |
4335249 |
T |
|
| Q |
195 |
ttattctgataaatttgagagactgcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgtt |
293 |
Q |
| |
|
|| || |||||||||||| ||| ||||| | ||| | || |||||||||| |||||||| || || ||||| ||||| | ||||| |||||||||| |
|
|
| T |
4335250 |
ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtt |
4335348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 4124254 - 4124157
Alignment:
| Q |
56 |
aaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaag |
153 |
Q |
| |
|
|||||||| ||||| |||||||||| || |||| | ||||| |||||| |||||||||| || ||||||||||| |||||||| |||||||||| |
|
|
| T |
4124254 |
aaaattctcaatcttagtcattctcattatctgacacagacccctgacttttcatacttgcctaaccttgaaaagctggtactcaaagattgtccaag |
4124157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 9419 - 9695
Alignment:
| Q |
19 |
ttgtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccg |
118 |
Q |
| |
|
||||||||||| |||| ||||||| ||| |||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
9419 |
ttgtggttttattttcttgcagatgctaaagaacttaaaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccg |
9518 |
T |
|
| Q |
119 |
aatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagact |
218 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |||||| || ||||||||||||| | ||| |
|
|
| T |
9519 |
aatcttgaaaagctagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccataaacttcttctgataaatttaacgaact |
9618 |
T |
|
| Q |
219 |
gcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
||| |||||||||||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
9619 |
gcacaggtcttcggaaacttccgagaagcatctatacattaaaatctctacaaactttgattctttctggatgttcc |
9695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 5176 - 4902
Alignment:
| Q |
21 |
gtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaa |
120 |
Q |
| |
|
||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| | |||| || |
|
|
| T |
5176 |
gtggttttattttcttgcagttgctagagaatctaaaaattcttaatctgagtcattcttgggatttgattgaaaccccagacttttcattcatgcctaa |
5077 |
T |
|
| Q |
121 |
tcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgc |
220 |
Q |
| |
|
||||||||||||||||||||| | |||||||| || || |||||||| ||||||||||||||| |||||| || |||| |||||||||| ||||||| |
|
|
| T |
5076 |
tcttgaaaagctagtactcaaagactgtccaagattaactgcggtctcccgtagcattggatctctgcataaacttcttctaataaatttgacagactgc |
4977 |
T |
|
| Q |
221 |
ataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
| | |||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4976 |
acaagtcttcagaaacttcctagaagcatatataaattaaaatctctagaaactttgattctttctggatgttcc |
4902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 6390 - 6664
Alignment:
| Q |
21 |
gtggttttaatttcctgcagatactagagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaa |
120 |
Q |
| |
|
||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| | |||| || |
|
|
| T |
6390 |
gtggttttattttcttgcagttgctagagaatctaaaaattcttaatctgagtcattcttgggatttgattgaaaccccagacttttcattcatgcctaa |
6489 |
T |
|
| Q |
121 |
tcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgc |
220 |
Q |
| |
|
||||||||||||||||||||| | |||||||| || || |||||||| ||||||||||||||| |||||| || |||| |||||||||| ||||||| |
|
|
| T |
6490 |
tcttgaaaagctagtactcaaagactgtccaagattaactgcggtctcccgtagcattggatctctgcataaacttcttctaataaatttgacagactgc |
6589 |
T |
|
| Q |
221 |
ataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttcc |
295 |
Q |
| |
|
| | |||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6590 |
acaagtcttcagaaacttcctagaagcatatataaattaaaatctctagaaactttgattctttctggatgttcc |
6664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 294
Target Start/End: Complemental strand, 5074232 - 5073985
Alignment:
| Q |
47 |
gagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaatt |
146 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||| || |||| |||| ||||| ||| || ||||||| ||||||||| | |||||||||| ||| |
|
|
| T |
5074232 |
gagaagctgaaaatactcaatcttagtcattctcattatctgacgcaaactccagatttttcaaacttgcctaatcttgaacaactagtactcacagatt |
5074133 |
T |
|
| Q |
147 |
gtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgcataggtcttcggaagcttccaagaag |
246 |
Q |
| |
|
||||||| ||||| ||| || ||||| |||| | ||| |||||||| |||||||||||||| ||| || || ||||||| || ||||||||||| |
|
|
| T |
5074132 |
gtccaaggttgtcagaggtttctcatagtattgaacatctcaataaaattcttctgataaatttggaagattgtattggtcttcagagccttccaagaag |
5074033 |
T |
|
| Q |
247 |
catctataaattaaaatctctagaaactttgattctttcaggatgttc |
294 |
Q |
| |
|
|||||||| || ||||||||| ||||| | |||||||| || ||||| |
|
|
| T |
5074032 |
tatctataagttgaaatctctaaaaactctcattctttccgggtgttc |
5073985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 265
Target Start/End: Original strand, 5278323 - 5278541
Alignment:
| Q |
47 |
gagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaatt |
146 |
Q |
| |
|
||||| || |||||||||||||| |||||||||| || |||| || |||||||||||| || || |||| |||||||||||||| |||||| ||| |
|
|
| T |
5278323 |
gagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaatcttgaaaagcttatactcatagatt |
5278422 |
T |
|
| Q |
147 |
gtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgcataggtcttcggaagcttccaagaag |
246 |
Q |
| |
|
| ||||| |||| | ||| || ||||||||||||| ||| |||||||| |||||||||| ||| ||| || || | |||| || ||||||||||| |
|
|
| T |
5278423 |
gcccaaggttgtgtgaggtttctcatagcattggatatctcgataaaattcttctgataaacttggaagattgtattagccttcagagtcttccaagaag |
5278522 |
T |
|
| Q |
247 |
catctataaattaaaatct |
265 |
Q |
| |
|
|||||||| || |||||| |
|
|
| T |
5278523 |
tatctataagttgaaatct |
5278541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 265
Target Start/End: Original strand, 5447398 - 5447562
Alignment:
| Q |
101 |
gactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaattattc |
200 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||||||| ||||||||| |||||| ||| || | |||||||||| ||| |||||||| ||| |
|
|
| T |
5447398 |
gacttttcatgcttgcctaatcttgaaaagctagtactcaaagattgtccaatgttgtctgaggtttctcctagcattggacatctcaataaaattcttc |
5447497 |
T |
|
| Q |
201 |
tgataaatttgagagactgcataggtcttcggaagcttccaagaagcatctataaattaaaatct |
265 |
Q |
| |
|
||||||||||| ||| || || || || | || || ||||||||||||||||| || |||||| |
|
|
| T |
5447498 |
tgataaatttggaagattgtattggcctaggtaacctcccaagaagcatctataagttgaaatct |
5447562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 294
Target Start/End: Complemental strand, 5690435 - 5690236
Alignment:
| Q |
95 |
accccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaa |
194 |
Q |
| |
|
|||||||||||| || | |||| ||||||||||||||| ||||||| |||||||||| ||| | ||| ||||||||||||||| ||| | |||| |
|
|
| T |
5690435 |
accccagacttttcaatcatgcctaatcttgaaaagctaatactcaaagattgtccaaggttgcgtgaggtttcccatagcattggacatctcgacaaaa |
5690336 |
T |
|
| Q |
195 |
ttattctgataaatttgagagactgcataggtcttcggaagcttccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttc |
294 |
Q |
| |
|
|| |||||||||||||| ||| || || | ||| || |||||||||||||||||||| || |||||||| ||||| | |||||||| || ||||| |
|
|
| T |
5690335 |
ttcttctgataaatttggaagattgtattagcctttctaaccttccaagaagcatctataagttgaaatctctgaaaactctcattctttccgggtgttc |
5690236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 265
Target Start/End: Original strand, 5176496 - 5176714
Alignment:
| Q |
47 |
gagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaatt |
146 |
Q |
| |
|
||||| || |||||||||||||| |||||||||| || |||| || |||||||||||| || || |||| |||||||||||||| |||||| ||| |
|
|
| T |
5176496 |
gagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaatcttgaaaagcttatactcatagatt |
5176595 |
T |
|
| Q |
147 |
gtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgcataggtcttcggaagcttccaagaag |
246 |
Q |
| |
|
| ||||| ||| | ||| ||||||||||||||| ||| |||||||| |||||||||| ||| ||| || || | |||| || ||||||||||| |
|
|
| T |
5176596 |
gcccaaggttgcgtgaggtttcccatagcattggacatctcgataaaattcttctgataaacttggaagattgtattagccttcagagtcttccaagaag |
5176695 |
T |
|
| Q |
247 |
catctataaattaaaatct |
265 |
Q |
| |
|
|||||||| || |||||| |
|
|
| T |
5176696 |
tatctataagttgaaatct |
5176714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 288
Target Start/End: Complemental strand, 5157946 - 5157711
Alignment:
| Q |
53 |
ctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaa |
152 |
Q |
| |
|
||||||||||| ||||| |||||||||| | |||| | |||||||||||| ||||| |||| |||||||| ||||| |||||||| ||||||||| |
|
|
| T |
5157946 |
ctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
5157847 |
T |
|
| Q |
153 |
gtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttgagagactgcataggtcttcggaagcttccaagaagcatcta |
252 |
Q |
| |
|
|||||| ||| || | |||||||||| ||| | ||||| |||| ||| ||||| ||| || | | ||||| | ||||||||||||||||| |
|
|
| T |
5157846 |
tgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgtgttagccttcgaagccttccaagaagcatcta |
5157747 |
T |
|
| Q |
253 |
taaattaaaatctctagaaactttgattctttcagg |
288 |
Q |
| |
|
||| || |||||||| ||| ||| ||||||||||| |
|
|
| T |
5157746 |
taagttgaaatctctgaaaattttaattctttcagg |
5157711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 5128693 - 5128577
Alignment:
| Q |
95 |
accccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataaaa |
194 |
Q |
| |
|
|||||||||||| |||| || || ||||||||||||||||||||||| ||||| ||| |||||| ||| || |||||| ||| ||| |||||| |
|
|
| T |
5128693 |
accccagacttttcatatttacctaatcttgaaaagctagtactcaaagattgttcaatgttgtctgaggtttctactagcatcggacatctcaataaaa |
5128594 |
T |
|
| Q |
195 |
ttattctgataaatttg |
211 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
5128593 |
ttcttctgataaatttg |
5128577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 5244185 - 5244097
Alignment:
| Q |
53 |
ctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaa |
141 |
Q |
| |
|
||||||||||| ||||| |||||||||| | |||| | |||||||||||| ||||| || | ||||||||||||||||||||||| |
|
|
| T |
5244185 |
ctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgtcaaatcttgaaaagctagtactcaa |
5244097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 5370334 - 5370422
Alignment:
| Q |
53 |
ctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaa |
141 |
Q |
| |
|
||||||||||| ||||| |||||||||| | |||| | |||||||||||| |||||||||| || ||||||||| |||||||||| |
|
|
| T |
5370334 |
ctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaagttagtactcaa |
5370422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 5257466 - 5257411
Alignment:
| Q |
239 |
ccaagaagcatctataaattaaaatctctagaaactttgattctttcaggatgttc |
294 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||||| |||||||| || ||||| |
|
|
| T |
5257466 |
ccaagaagcatctataagttgaaatctctaaaaactttcattctttctgggtgttc |
5257411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 5350205 - 5350256
Alignment:
| Q |
101 |
gactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaa |
152 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
5350205 |
gacttttcatacatgcctaatcttgaaaagctagtactcaaagattgtccaa |
5350256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 5066970 - 5066913
Alignment:
| Q |
95 |
accccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaa |
152 |
Q |
| |
|
||||| |||||| |||| |||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
5066970 |
acccctgacttttcatatatgcctaatcttgaaaagctagtactcaaagattgtccaa |
5066913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 5344664 - 5344729
Alignment:
| Q |
93 |
aaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaagtttgt |
158 |
Q |
| |
|
||||||| |||||| | ||||| || |||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
5344664 |
aaaccccggacttttcttacttacctaatcttgaaaagttagtactcgtggattgtccaagtttgt |
5344729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 5147220 - 5147056
Alignment:
| Q |
47 |
gagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaatt |
146 |
Q |
| |
|
||||| ||||||||||| || || ||||| |||| ||||||| | |||||| ||||| | ||||||| ||||||||| | ||||||||| ||| |
|
|
| T |
5147220 |
gagaagctaaaaattctcaagcttagtcactctcattatttgacacagaccccaaactttttaaacttgcctaatcttgaacaactagtactctctgatt |
5147121 |
T |
|
| Q |
147 |
gtccaagtttgtctatggtctcccatagcattggatctctacataaaattattctgataaatttg |
211 |
Q |
| |
|
|||||| |||||| || || ||||| ||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
5147120 |
gtccaatgttgtctgaagtttctcatagtattggatatctcaataaaattcttctgataaatttg |
5147056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 5244002 - 5243950
Alignment:
| Q |
236 |
cttccaagaagcatctataaattaaaatctctagaaactttgattctttcagg |
288 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||||| ||||| ||||| |
|
|
| T |
5244002 |
cttccaagaagcatctataagttgaaatctctgaaaactttcattctctcagg |
5243950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 9215 - 9119
Alignment:
| Q |
56 |
aaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaa |
152 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||| | |||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
9215 |
aaaattctcaatcttagtcattctcattatttgatgcataccccagacttttcatatttgcctaatcttgaaaagctagtactcaaagattgtccaa |
9119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 18935189 - 18935355
Alignment:
| Q |
93 |
aaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaagtttgtctatggtctcccatagcattggatctctacataa |
192 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||| || ||||||| |||| ||||||||||| ||| || ||||| || ||| ||| | || |
|
|
| T |
18935189 |
aaaccccgaacttttcaaacttgccgaatcttgaaaagttaatactcaaagattgcccaagtttgtcctcggtttctcatagtataggacttctcaagaa |
18935288 |
T |
|
| Q |
193 |
aattattctgataaatttgagagactgcataggtcttcggaagcttccaagaagcatctataaatta |
259 |
Q |
| |
|
|||| || | |||||||||| |||||| | ||| ||| | | |||||||||||||||||||||||| |
|
|
| T |
18935289 |
aattcttttaataaatttgaaagactgtacaggcctttgtgaacttccaagaagcatctataaatta |
18935355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 34724897 - 34724798
Alignment:
| Q |
60 |
ttcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaattgtccaagtttgtc |
159 |
Q |
| |
|
|||||||||| |||||||||| | |||| |||| ||||||||| |||||||||| |||||||||||| || ||||||| ||||||||| |||||| |
|
|
| T |
34724897 |
ttcttaatcttagtcattctcataacttgaaacaaacaccagacttttcatacttgccaaatcttgaaaagttaatactcaaagattgtccaaatttgtc |
34724798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 34724756 - 34724699
Alignment:
| Q |
201 |
tgataaatttgagagactgcataggtcttcggaagcttccaagaagcatctataaatt |
258 |
Q |
| |
|
|||||||||||| |||||| | ||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
34724756 |
tgataaatttgaaagactgtacaggcctttgtgagcttccaagaagcatctataaatt |
34724699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 150
Target Start/End: Original strand, 8877366 - 8877469
Alignment:
| Q |
47 |
gagaatctaaaaattcttaatctgagtcattctccggatttgactgaaaccccagactttacatacttgccgaatcttgaaaagctagtactcaagaatt |
146 |
Q |
| |
|
||||| ||||||||||| ||||| || || |||| || |||| |||| ||||||||| | ||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
8877366 |
gagaagctaaaaattctcaatcttagccactctcatcatctgacacaaactccagactttttaaacttgcctaatcttgaaaagctagtactcaaagatt |
8877465 |
T |
|
| Q |
147 |
gtcc |
150 |
Q |
| |
|
|||| |
|
|
| T |
8877466 |
gtcc |
8877469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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