View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_5 (Length: 604)
Name: NF15978_low_5
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 16 - 599
Target Start/End: Complemental strand, 50766944 - 50766361
Alignment:
| Q |
16 |
tgttcaacttcggatgagnnnnnnntgggattcaatcatctcggtaagaaacacatgctgctagtgcatgcatactaatcttatacttccannnnnnnnn |
115 |
Q |
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| T |
50766944 |
tgttcaacttcggatgagaaaaaaatgggattcaatcatctcggtaagaaacacatgctgctagtgcatgcatactaatcttatacttccattttatttt |
50766845 |
T |
|
| Q |
116 |
nnnnnnnnagcaatctaaatatttgaataatgaattcccttttgcaatgtctcaccatcgaatccatcgtgaacttgtgattcatgtgttagcatatact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766844 |
tcatttttagcaatctaaatatttgaataatgaattcccttttgcaatgtctcaccatcgaatccatcgtgaacttgtgattcatgtgttagcatatact |
50766745 |
T |
|
| Q |
216 |
tcacaggatttggaatgtggcaatattggatatacatttgaatccttaggcaatgacagttacttttaggttttgctagtcataacaggaaagtaaagaa |
315 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50766744 |
tcacaggatttggaatgtgacaatattggatatacatttgaatccttaggcaatgacagttacttttaggttttgctagtcatagcaggaaagtaaagaa |
50766645 |
T |
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| Q |
316 |
cagattgtgttaggtgtgacacctaggttgctgataatcgtgtcatgtgtaaattggatggtagtatttaaacacaattgcccgaactctgatcaatttc |
415 |
Q |
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| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766644 |
cggattgtgttaggtgtgactcctaggttgctgataatcgtgtcatgtgtaaattggatggtagtatttaaacacaattgcccgaactctgatcaatttc |
50766545 |
T |
|
| Q |
416 |
taacaaatttaaatttgttcagatatgtaaatggatattgctacggagctccttcaagccagatgtaatctgctataatttactcattgatgcttttgga |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766544 |
taacaaatttaaatttgttcagatatgtaaatggatattgctacggagctccttcaagccagatgtaatctgctataatttactcattgatgcttttgga |
50766445 |
T |
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| Q |
516 |
caaaagtttctatacaaggaggcagaatccacatatctgcagcttcatgaggctagatgcattcctaatgaagatacctatgct |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766444 |
caaaagtttctatacaaggaggcagaatccacatatctgcagcttcatgaggctagatgcattcctaatgaagatacctatgct |
50766361 |
T |
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