View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15978_low_52 (Length: 287)

Name: NF15978_low_52
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15978_low_52
NF15978_low_52
[»] chr2 (15 HSPs)
chr2 (15-91)||(31387068-31387144)
chr2 (19-91)||(31359929-31360001)
chr2 (22-77)||(31419276-31419331)
chr2 (12-66)||(31255796-31255850)
chr2 (12-66)||(31307198-31307252)
chr2 (14-91)||(31292788-31292865)
chr2 (20-77)||(31320999-31321056)
chr2 (10-76)||(31281794-31281860)
chr2 (152-209)||(17383777-17383834)
chr2 (10-62)||(31374753-31374805)
chr2 (140-196)||(42094233-42094289)
chr2 (151-209)||(37810163-37810221)
chr2 (160-209)||(42029415-42029464)
chr2 (23-71)||(31180681-31180729)
chr2 (161-209)||(33171673-33171721)
[»] chr5 (3 HSPs)
chr5 (152-206)||(32493329-32493383)
chr5 (140-203)||(3907677-3907740)
chr5 (151-209)||(1570008-1570066)
[»] chr1 (5 HSPs)
chr1 (140-197)||(38663704-38663761)
chr1 (140-193)||(7444334-7444387)
chr1 (139-201)||(18075216-18075278)
chr1 (160-193)||(39184184-39184217)
chr1 (140-209)||(49822581-49822650)
[»] chr8 (2 HSPs)
chr8 (140-201)||(42072713-42072774)
chr8 (152-201)||(40175919-40175968)
[»] chr3 (6 HSPs)
chr3 (140-209)||(14345168-14345237)
chr3 (140-209)||(36480724-36480793)
chr3 (140-197)||(40117779-40117836)
chr3 (141-209)||(45332561-45332629)
chr3 (166-209)||(35357396-35357439)
chr3 (160-201)||(33244714-33244755)
[»] chr7 (4 HSPs)
chr7 (160-203)||(49106929-49106972)
chr7 (152-209)||(2276294-2276351)
chr7 (140-197)||(12275767-12275824)
chr7 (166-207)||(24516575-24516616)
[»] chr4 (2 HSPs)
chr4 (158-201)||(32286302-32286345)
chr4 (140-209)||(21433890-21433959)


Alignment Details
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 31387068 - 31387144
Alignment:
Q  15 aaaggtactcggaattgttccacttaatttgttaaagctgaggtctctgaaagaaatatcatactgggaataagtta 91  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||    
T  31387068 aaaggtactcggaatcgttccacttaatttgttaaagctgaggtctctgaaagagatatcatattgagaatgagtta 31387144  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 31359929 - 31360001
Alignment:
Q  19 gtactcggaattgttccacttaatttgttaaagctgaggtctctgaaagaaatatcatactgggaataagtta 91  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||||| |||||||| || ||||||||||    
T  31359929 gtacttggaattgttccacttatgttgttaaagctgaggtctctgaaagagatatcatattgagaataagtta 31360001  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 31419331 - 31419276
Alignment:
Q  22 ctcggaattgttccacttaatttgttaaagctgaggtctctgaaagaaatatcata 77  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  31419331 ctcggaattgttccacttaaattgttaaagccgaggtctctgaaagatatatcata 31419276  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 31255796 - 31255850
Alignment:
Q  12 agcaaaggtactcggaattgttccacttaatttgttaaagctgaggtctctgaaa 66  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  31255796 agcataggtactcggaatcgttccacttaagttgttaaagctgaggtctctgaaa 31255850  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 31307198 - 31307252
Alignment:
Q  12 agcaaaggtactcggaattgttccacttaatttgttaaagctgaggtctctgaaa 66  Q
    |||| |||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  31307198 agcataggtcctcggaatcattccacttaatttgttaaagctgaggtctctgaaa 31307252  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 31292788 - 31292865
Alignment:
Q  14 caaaggtactcggaattgttccacttaatttgttaaagctgaggtctctgaaagaaatatcatactgggaataagtta 91  Q
    ||||||||  ||| |||||||||||||  || ||||||||||||||||||||||| |||||||| || |||| |||||    
T  31292788 caaaggtatccgggattgttccacttatgttattaaagctgaggtctctgaaagatatatcataatgagaatgagtta 31292865  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 31320999 - 31321056
Alignment:
Q  20 tactcggaattgttccacttaatttgttaaagctgaggtctctgaaagaaatatcata 77  Q
    ||||||| |||||||| |||||| ||||||||||||||||||||||| | ||||||||    
T  31320999 tactcgggattgttcctcttaatctgttaaagctgaggtctctgaaaaagatatcata 31321056  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 31281794 - 31281860
Alignment:
Q  10 gtagcaaaggtactcggaattgttccacttaatttgttaaagctgaggtctctgaaagaaatatcat 76  Q
    |||||| || |||| ||||||||||||||||   ||||||||||||||||||||||| | |||||||    
T  31281794 gtagcatagatacttggaattgttccacttatgctgttaaagctgaggtctctgaaaaagatatcat 31281860  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 17383834 - 17383777
Alignment:
Q  152 tgggtccaatataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    ||||||| ||| ||||||||| |||||||| ||| ||||||||||||||||| |||||    
T  17383834 tgggtcccatagaaatttggtgggacccatatgacttttaaccaataaaagagagtgt 17383777  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 31374753 - 31374805
Alignment:
Q  10 gtagcaaaggtactcggaattgttccacttaatttgttaaagctgaggtctct 62  Q
    |||||| || |||||||||||||||||||||  ||||||||||||| ||||||    
T  31374753 gtagcatagatactcggaattgttccacttatgttgttaaagctgacgtctct 31374805  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 42094289 - 42094233
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaa 196  Q
    ||||||||| | ||||||| ||||||||||||| || ||||| ||||||||||||||    
T  42094289 caccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaa 42094233  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 37810221 - 37810163
Alignment:
Q  151 atgggtccaatataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    |||||||| ||||||||||||| || ||||| |||||| |||||||| ||||| |||||    
T  37810221 atgggtcccatataaatttggtgggtcccatgtgaattataaccaatcaaagagagtgt 37810163  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 42029415 - 42029464
Alignment:
Q  160 atataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    ||||||||||||| || | ||| ||||||||||||||||||| |||||||    
T  42029415 atataaatttggtgggtctcatgtgaattttaaccaataaaaaaaagtgt 42029464  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 31180681 - 31180729
Alignment:
Q  23 tcggaattgttccacttaatttgttaaagctgaggtctctgaaagaaat 71  Q
    ||||||| | |||| ||||||||||||||||||| ||||||||| ||||    
T  31180681 tcggaatcggtccagttaatttgttaaagctgagatctctgaaaaaaat 31180729  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 33171673 - 33171721
Alignment:
Q  161 tataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    |||||||||||| |||||||| |||| |||||||||| ||||| |||||    
T  33171673 tataaatttggtgggacccatgtgaaatttaaccaatcaaagagagtgt 33171721  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 32493383 - 32493329
Alignment:
Q  152 tgggtccaatataaatttggtaggacccatttgaattttaaccaataaaagaaag 206  Q
    ||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||    
T  32493383 tgggtcccatataaatttagtaggatccatatgaattttaaccaataaaagaaag 32493329  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 3907740 - 3907677
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaataaaaga 203  Q
    ||||||||| | ||||||| ||||||||||||| || ||||| ||||||||||||||| |||||    
T  3907740 caccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaatcaaaga 3907677  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 1570008 - 1570066
Alignment:
Q  151 atgggtccaatataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    |||||||| |||||||||||||  || |||||| | ||||||||||| |||||||||||    
T  1570008 atgggtcccatataaatttggtgagatccattttagttttaaccaatcaaagaaagtgt 1570066  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 38663704 - 38663761
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaat 197  Q
    ||||||||| ||||||||| ||||||||||||| || ||||| |||||||||||||||    
T  38663704 caccaaatcatatgggtcctatataaatttggtgggtcccatgtgaattttaaccaat 38663761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 7444334 - 7444387
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaac 193  Q
    ||||||||| | ||||||| |||||||||||||||| ||||| |||||||||||    
T  7444334 caccaaatcatgtgggtcccatataaatttggtaggtcccatgtgaattttaac 7444387  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 18075216 - 18075278
Alignment:
Q  139 acaccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaataaaa 201  Q
    |||||||||| | ||||||| ||||||||||||| ||| |||| |||||||  ||||||||||    
T  18075216 acaccaaatcatgtgggtcccatataaatttggtgggatccatatgaatttagaccaataaaa 18075278  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 39184217 - 39184184
Alignment:
Q  160 atataaatttggtaggacccatttgaattttaac 193  Q
    |||||||||||||||||||||| |||||||||||    
T  39184217 atataaatttggtaggacccatgtgaattttaac 39184184  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 49822581 - 49822650
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    ||||||||  |||||||||  |||||||||| | ||| |||| ||||||||||||||| ||||| |||||    
T  49822581 caccaaattatatgggtcccgtataaatttgatgggatccatgtgaattttaaccaatcaaagagagtgt 49822650  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 42072713 - 42072774
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaataaaa 201  Q
    ||||||||| ||||||||  ||||||||||||| || ||||| | |||||||||||||||||    
T  42072713 caccaaatcatatgggtctcatataaatttggtgggtcccatgtaaattttaaccaataaaa 42072774  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 40175968 - 40175919
Alignment:
Q  152 tgggtccaatataaatttggtaggacccatttgaattttaaccaataaaa 201  Q
    ||||||| ||||||||||||| |  ||||| |||||||||||||||||||    
T  40175968 tgggtcccatataaatttggtggatcccatgtgaattttaaccaataaaa 40175919  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 14345237 - 14345168
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    ||||||||| | ||||||| ||||||||||||| || | ||| || |||||||||||| |||||||||||    
T  14345237 caccaaatcatgtgggtcccatataaatttggtgggtctcatgtggattttaaccaatcaaagaaagtgt 14345168  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 36480793 - 36480724
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    ||||||||| | ||||||| ||||||||||| | || ||||| ||||||||||||||| ||||| |||||    
T  36480793 caccaaatcatgtgggtcccatataaatttgttgggtcccatgtgaattttaaccaatcaaagagagtgt 36480724  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 40117779 - 40117836
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaat 197  Q
    ||||||||| | ||||||| |  ||||||||| |||||||||||||||||||||||||    
T  40117779 caccaaatcatgtgggtcccacttaaatttggcaggacccatttgaattttaaccaat 40117836  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 45332629 - 45332561
Alignment:
Q  141 accaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    |||||||| | ||||||| ||||||||||||| |   |||| ||||||||||||||| |||||||||||    
T  45332629 accaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaagaaagtgt 45332561  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 35357396 - 35357439
Alignment:
Q  166 atttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||    
T  35357396 atttggtaggacccatgtgaattttaaccaatcaaagagagtgt 35357439  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 33244755 - 33244714
Alignment:
Q  160 atataaatttggtaggacccatttgaattttaaccaataaaa 201  Q
    |||||||||||||  ||| |||||||||||||||||||||||    
T  33244755 atataaatttggtgagactcatttgaattttaaccaataaaa 33244714  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 49106972 - 49106929
Alignment:
Q  160 atataaatttggtaggacccatttgaattttaaccaataaaaga 203  Q
    |||||||||||||||||||||| |||||||||| |||| |||||    
T  49106972 atataaatttggtaggacccatgtgaattttaatcaatcaaaga 49106929  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 2276351 - 2276294
Alignment:
Q  152 tgggtccaatataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    |||||||  |||||||||||| ||| |||| ||||||||||||||| ||||| |||||    
T  2276351 tgggtcccttataaatttggtgggatccatgtgaattttaaccaatcaaagagagtgt 2276294  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 12275824 - 12275767
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaat 197  Q
    ||||||||| | ||||||| ||||||||||||| || ||||| ||| |||||||||||    
T  12275824 caccaaatcatgtgggtcccatataaatttggtgggtcccatgtgatttttaaccaat 12275767  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 24516616 - 24516575
Alignment:
Q  166 atttggtaggacccatttgaattttaaccaataaaagaaagt 207  Q
    ||||||| |||||||| ||||||||||||||| |||||||||    
T  24516616 atttggtgggacccatgtgaattttaaccaatcaaagaaagt 24516575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 32286302 - 32286345
Alignment:
Q  158 caatataaatttggtaggacccatttgaattttaaccaataaaa 201  Q
    ||||||||||||||| ||| |||| |||||||||||||||||||    
T  32286302 caatataaatttggttggatccatgtgaattttaaccaataaaa 32286345  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 21433959 - 21433890
Alignment:
Q  140 caccaaatcgtatgggtccaatataaatttggtaggacccatttgaattttaaccaataaaagaaagtgt 209  Q
    ||||||||| | ||||||  ||||||||||||| || | ||| ||||||||||||||| ||||| |||||    
T  21433959 caccaaatcatgtgggtctcatataaatttggtgggtctcatgtgaattttaaccaatcaaagagagtgt 21433890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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