View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_58 (Length: 271)
Name: NF15978_low_58
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 36884033 - 36884272
Alignment:
| Q |
16 |
attttagtcgcagcatggaacttactccagagcctgagcaacacctaaagcaatccggagacgttggaaccacgctagtggttcacttgctccactgtga |
115 |
Q |
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| T |
36884033 |
attttagtcgcagcatggaacttactccagagcctgagcaacacctaaagcaatccggagacgttggaaccacgctagtggttcacttgctccactgtga |
36884132 |
T |
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| Q |
116 |
agggcatcatttagagttaaatgtccaaagtaatcgtaaacaagaagatgctctccgtgctcaaaacagtaaccattgagtgctacgatattggggtgct |
215 |
Q |
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| T |
36884133 |
agggcatcatttagagttaaatgtccaaagtaatcgtaaacaagaagatgctctccgtgctcaaaacagtaaccattgagtgctacgatattggggtgct |
36884232 |
T |
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| Q |
216 |
tcagtttggaagccgtgcaaatgacatccatgaacttttc |
255 |
Q |
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| T |
36884233 |
tcagtttggaagccgtgcaaatgacatccatgaacttttc |
36884272 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 22554454 - 22554570
Alignment:
| Q |
103 |
tgctccactgtgaagggcatcatttagagttaaatgtccaaagtaatcgtaaacaagaagatgctctccgtgctcaaaacagtaaccattgagtgctacg |
202 |
Q |
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| T |
22554454 |
tgctgcactgtgtagagcatcatctagagttaaatttctgacatagtcatagacaagaagatgttgtccatgctccaaacagtaacctttaagtgcaaca |
22554553 |
T |
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| Q |
203 |
atattggggtgcttcag |
219 |
Q |
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| T |
22554554 |
atgttgggatgcttcag |
22554570 |
T |
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