View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_61 (Length: 269)
Name: NF15978_low_61
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 7841398 - 7841658
Alignment:
| Q |
1 |
tgtcactatggtttcaccaaacttatcgtcaataaaaacactgactatgcgttctgaattttatttcctcaataacgctactaacaactaatactaacct |
100 |
Q |
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| T |
7841398 |
tgtcaccatggtttcaccaaacttatcgtcaataaaaacactaactatgtgttctgaattttatttcctcaatagcgctactaacaactaatactaacct |
7841497 |
T |
|
| Q |
101 |
ttgtcgttcatnnnnnnnnnnn----cctaaagagctaatacctataggaaaattatatatattagtgaggttcttacggttatggggtattcctcatct |
196 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7841498 |
ttgtcgttcattaaaaaaaaaaaaaacctaaagagctaatacctataggaaaattatatatactagtgaggttcttacggttatggggtattcctcatct |
7841597 |
T |
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| Q |
197 |
tagctccaagatttcctgtggcttctgaagccttctcctttgcagcctcgtatttagcctt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7841598 |
tagctccaagatttcctgtggcttctgaagccttctcctttgcagcctggtatttagcctt |
7841658 |
T |
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