View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_66 (Length: 263)
Name: NF15978_low_66
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 6860371 - 6860126
Alignment:
| Q |
1 |
taatgaacgtacaagatgtcaaaactcatgaaccacgtccaagttcggggttaatgaagttaccttggaaattaatgagttttgacaccttgtaattaac |
100 |
Q |
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| T |
6860371 |
taatgaacgtacaagatgtcaaaactcatgaaccacgtccaagttcggggttaatgaagttaccttggaaattaatgagttttgacaccttgtaattaac |
6860272 |
T |
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| Q |
101 |
cacctatttgaattgtactaaccaattaaaaatttgtcgcaaaagttgtctaaagttagttgcacaaaaatcatttatcttgtctaatagggagattata |
200 |
Q |
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| T |
6860271 |
cacctatttgaattgtactaaccaattaaaaatttgtcgcaaaagttgtctaaagttagttgcacaaaaatcatttatcttgtctaatagggagattata |
6860172 |
T |
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| Q |
201 |
tatagatgctttaagtggaatgagcatcttttgtttttgcttcatc |
246 |
Q |
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| T |
6860171 |
tatagatgctttaagtggaatgagcatcttttgtttttgcttcatc |
6860126 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 30033226 - 30033142
Alignment:
| Q |
92 |
gtaattaaccacctatttgaattgtactaaccaattaaaaatttgtcgcaaaagttgtctaaagttagttgcacaaaaatcattt |
176 |
Q |
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| T |
30033226 |
gtaactaatcacctatttaaaatgtgttaaccacataaaaagttgtcgcaaaaattgtctaaacttagttgtacaaatatcattt |
30033142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 4504763 - 4504849
Alignment:
| Q |
95 |
attaaccacctatttgaattgtactaaccaattaaaaatttgtcgcaaaagttgtctaaagttagttgcacaaaaatcatttatctt |
181 |
Q |
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| T |
4504763 |
attaactacctatttgaattgcattaactacttgaaaatttagcgtgaaagttgcctaaatttagttgtacaaaaatcatttttctt |
4504849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 5008717 - 5008766
Alignment:
| Q |
105 |
tatttgaattgtactaaccaattaaaaatttgtcgcaaaagttgtctaaa |
154 |
Q |
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| T |
5008717 |
tatttgaattgtgttaaccacttaaaaagttgtcacaaaagttgtctaaa |
5008766 |
T |
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