View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_7 (Length: 565)
Name: NF15978_low_7
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 19 - 554
Target Start/End: Complemental strand, 5020102 - 5019567
Alignment:
| Q |
19 |
atagttgaaaaagtaaaacaccagagtcgttagaaactaatccattttaacttggtatcattatcatattattgattcactgtgaacgtatttcacacat |
118 |
Q |
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| T |
5020102 |
atagttgaaaaagtaaaacaccagagtcgttagaaactaatccattttaacttggtatcattatcatattattgattcactgtgaacgtatttcacacat |
5020003 |
T |
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| Q |
119 |
ccaatcttttggtttggtctcagaaaaagaacaaaattatcaatatatggttcaaaaaccaaaccaacttggtagcattactggagaaaggtgaccttga |
218 |
Q |
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| T |
5020002 |
ccaatcttttggtttggtctcagaaaaagaacaaaattatcaatatatggttcaaaaaccaaaccaacttggtagcattactggagaaaggtgaccttga |
5019903 |
T |
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| Q |
219 |
attttggtcacttgttcacaagcataatcatatcattgattcactgaagatagttcatatatccactatttggtcttacagtgaacaatcactatatcaa |
318 |
Q |
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| T |
5019902 |
attttggtcacttgttcacaagcataatcatatcattgattcactgaagatagttcatatatccactatttggtcttacagtgaacaatcactatatcaa |
5019803 |
T |
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| Q |
319 |
cattattacattttaagttcctgagtaatgtgagcaatcattaaaaaacgtattggataggtactaacagcgaacaaaaggaacaaaagtcgattatcat |
418 |
Q |
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| T |
5019802 |
cattattacattttaagttcctgagtaatgtgagcaatcattaaaaaacgtattggataggtactaacagcgaacaaaaggaacaaaagtcgattatcat |
5019703 |
T |
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| Q |
419 |
tacaaactcaaatccaaacccaaacatgtaaaactcataagtcataactacctaggaacatataaattcagcacattatccttcaaaagcattccacatt |
518 |
Q |
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| T |
5019702 |
tacaaactcaaatccaaacccaaacatgtaaaactcataagtcataactacctaggaacatataaattcagcacattatccttcaaaagcattccacatt |
5019603 |
T |
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| Q |
519 |
tcttaaacttggtctttctacatagtcccccttcat |
554 |
Q |
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| T |
5019602 |
tcttaaacttggtctttctacatagtcccccttcat |
5019567 |
T |
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