View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_75 (Length: 242)
Name: NF15978_low_75
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 13150057 - 13149838
Alignment:
| Q |
7 |
agacttttctgtttggtttttctttagtttactcatagttcacaaaagtgggaaaagagaaagaaaaatggaactttctcaacttggttttcttgaggag |
106 |
Q |
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| T |
13150057 |
agacttttctgtttggtttttctttagtttattcatagttcacaaaagtgggaaaagagaaagaaaaatggaactttctcaacttggttttcttgaggag |
13149958 |
T |
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| Q |
107 |
ctactagctccaagaaaagacacatggaatactttatccaatggtttgaatgagttactattccctaatggttggacctttgactcatttgatgaaaatc |
206 |
Q |
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| T |
13149957 |
ctactagctccaagaaaagacacatggaatactttatccactggtttgaatgagttactactccctaatggttggacctttgactcatttgatgaaaatc |
13149858 |
T |
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| Q |
207 |
ttttcatcaatccatcttta |
226 |
Q |
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| T |
13149857 |
ttctcatcaatccatcttta |
13149838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 29008871 - 29009058
Alignment:
| Q |
30 |
ttagtttactcatagttcacaaaagtgggaaaagagaaagaaaaatggaactttctcaacttggttttcttgaggagctactagctccaagaaaagacac |
129 |
Q |
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| T |
29008871 |
ttagtttattcatagttcacaaaagtgggaaaagagagagaaaaatggaact---------tggttttcttgaggagctactagctccaagaaaagacac |
29008961 |
T |
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| Q |
130 |
atggaatactttatccaatggtttgaatgagttactattccctaatggttggacctttgactcatttgatgaaaatcttttcatcaatccatcttta |
226 |
Q |
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| T |
29008962 |
atggaatactttatccaatggtttgaatgagttactactccctaatggttggacctttgactcatttgatgaaaatcttctcatcaatccatcttta |
29009058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 23851956 - 23851917
Alignment:
| Q |
168 |
tccctaatggttggacctttgactcatttgatgaaaatct |
207 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||| |
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| T |
23851956 |
tccctactggttggacctttgactcatttgatgacaatct |
23851917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29007925 - 29007957
Alignment:
| Q |
1 |
tgttatagacttttctgtttggtttttctttag |
33 |
Q |
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| T |
29007925 |
tgttaaagacttttctgtttggtttttctttag |
29007957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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