View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15978_low_78 (Length: 239)
Name: NF15978_low_78
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_78 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 16912828 - 16912715
Alignment:
| Q |
112 |
ggaatccaataaaatcctctacgactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16912828 |
ggaatccaataaaatcctctacaactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
16912729 |
T |
|
| Q |
212 |
tatacatgttcatc |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16912728 |
tatacatgttcatc |
16912715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 16918002 - 16917889
Alignment:
| Q |
112 |
ggaatccaataaaatcctctacgactccaaacaaacgagagaggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16918002 |
ggaatccaataaaatcctctacaactccaaacaaacgagataggatttaaccatcaatgatttaaatcaaatccaaaatattttgcaatgatttgaatca |
16917903 |
T |
|
| Q |
212 |
tatacatgttcatc |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16917902 |
tatacatgttcatc |
16917889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University