View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15978_low_8 (Length: 555)

Name: NF15978_low_8
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15978_low_8
NF15978_low_8
[»] chr8 (13 HSPs)
chr8 (1-251)||(29160183-29160433)
chr8 (252-466)||(39254787-39255002)
chr8 (311-466)||(12351121-12351279)
chr8 (252-466)||(44752409-44752618)
chr8 (252-397)||(62144-62288)
chr8 (311-397)||(1366517-1366603)
chr8 (311-393)||(216451-216533)
chr8 (311-393)||(693011-693093)
chr8 (311-393)||(697220-697302)
chr8 (311-393)||(730074-730156)
chr8 (311-393)||(853969-854051)
chr8 (391-435)||(62047-62091)
chr8 (391-434)||(1366421-1366464)
[»] chr5 (3 HSPs)
chr5 (251-397)||(13654932-13655077)
chr5 (387-435)||(13655129-13655177)
chr5 (311-353)||(4553787-4553829)
[»] chr6 (1 HSPs)
chr6 (252-393)||(9574479-9574619)
[»] chr4 (10 HSPs)
chr4 (311-397)||(28684136-28684222)
chr4 (311-397)||(47199299-47199385)
chr4 (311-392)||(55159238-55159319)
chr4 (311-393)||(43738381-43738463)
chr4 (315-393)||(47524104-47524181)
chr4 (387-435)||(28684036-28684084)
chr4 (387-441)||(47199193-47199247)
chr4 (167-218)||(39624195-39624246)
chr4 (250-292)||(47198603-47198645)
chr4 (252-292)||(25371553-25371593)
[»] chr1 (6 HSPs)
chr1 (311-393)||(37874869-37874951)
chr1 (251-365)||(35616710-35616824)
chr1 (311-365)||(48870689-48870743)
chr1 (311-363)||(17494470-17494522)
chr1 (243-292)||(48869760-48869809)
chr1 (252-292)||(37874064-37874104)
[»] scaffold1037 (1 HSPs)
scaffold1037 (312-393)||(2807-2888)
[»] scaffold1031 (1 HSPs)
scaffold1031 (312-393)||(2926-3007)
[»] chr2 (4 HSPs)
chr2 (316-393)||(5277303-5277380)
chr2 (315-393)||(36475841-36475917)
chr2 (246-292)||(5276459-5276505)
chr2 (167-229)||(28104999-28105061)
[»] chr3 (2 HSPs)
chr3 (311-365)||(17227884-17227938)
chr3 (180-229)||(24094287-24094336)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 29160183 - 29160433
Alignment:
Q  1 tagtttgtaacctacaaagattaccccaaaacttgataagtcaaattatggatggtgttgaccgacaaaatatctgaacaaaattcttcatacatacatg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||    
T  29160183 tagtttgtaacctacaaagattaccccaaaacctgataagtcaaatcatggatggtgttgactgacaaaatatctgaacaaaatccttcaaacatacatg 29160282  T
Q  101 taatggtcaaatcatctgtcatgtgactcttaatgagctaagtagacatgtcagatggaaataacggattctatgaacaaactgataaaattcaagtctc 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29160283 taatggtcaaaccatctgtcatgtgactcttaatgagctaagtagacatgtcagatggaaataacggattctatgaacaaactgataaaattcaagtctc 29160382  T
Q  201 aaatgtagggattctaataattttgaataaaagaatccaatacaaaagaga 251  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29160383 aaatgtagggattctaataattttgaatagaagaatccaatacaaaagaga 29160433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 252 - 466
Target Start/End: Original strand, 39254787 - 39255002
Alignment:
Q  252 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 351  Q
    |||| ||||||| ||| ||||| |||||||||||||||||||| || |||         | |||||||||||||||||||| ||||||||||||||||||    
T  39254787 ggtggcatttaatttgggaaaggagacttctttcccaccataggaaagtctttttttt-atcattagattgagtagtaccatcattgttattatagtcta 39254885  T
Q  352 tccacat--tatatttgcttcacatcatctctaaccttaacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaatatgaatatccaga 449  Q
    ||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||| |||    
T  39254886 tccacacactatattttcttcacatcatctctaaccttaacaacaacaacacactcttctctcctttgaaaatcaaaacaaaacaacatggaaatctaga 39254985  T
Q  450 aaatcttcataatcata 466  Q
    |||||||||||||||||    
T  39254986 aaatcttcataatcata 39255002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 311 - 466
Target Start/End: Original strand, 12351121 - 12351279
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaacaac---acactctt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||   ||||||||    
T  12351121 accattagattgagtagtaccaccattgttattatagtctatccacactatattttcttcacatcatttctaaacttaacaacaacaacaaaacactctt 12351220  T
Q  408 ctctccttcgaaaatcaaaacaaaacaatatgaatatccagaaaatcttcataatcata 466  Q
    |||||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  12351221 ctctccttagaaaatcaaaacaaaacaacatggaaatccagaaaatcttcataatcata 12351279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 252 - 466
Target Start/End: Complemental strand, 44752618 - 44752409
Alignment:
Q  252 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 351  Q
    |||| ||||||||||| ||||| |||||||||||||||||||| ||  ||         ||||||| |||||||||||||||||||||||||||||||||    
T  44752618 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaaatctttttttt-accattaaattgagtagtaccaccattgttattatagtcta 44752520  T
Q  352 tccacattatatttgcttcacatcatctctaaccttaacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaatatgaatatccagaaa 451  Q
    |||||| ||||||| |||||||||||||||||||||||||||   ||||||||| ||||||||| ||||||||||||||||||| ||||| ||||| |||    
T  44752519 tccacactatattttcttcacatcatctctaaccttaacaac---aacacactc-tctctcctttgaaaatcaaaacaaaacaacatgaaaatccaaaaa 44752424  T
Q  452 atcttcataatcata 466  Q
    |||||||||||||||    
T  44752423 atcttcataatcata 44752409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 252 - 397
Target Start/End: Complemental strand, 62288 - 62144
Alignment:
Q  252 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 351  Q
    |||||||||||| ||||||||| |||||||||||||||||||| || |||         | |||||||||||||||||||||||||||||||||||||||    
T  62288 ggtgacatttaatttgagaaaggagacttctttcccaccataggaaagtcattttttt-atcattagattgagtagtaccaccattgttattatagtcta 62190  T
Q  352 tccacattatatttgcttcacatcatctctaaccttaacaacaaca 397  Q
    |||||| ||||||| ||||||||||||||||||||||||| |||||    
T  62189 tccacactatattttcttcacatcatctctaaccttaacatcaaca 62144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 311 - 397
Target Start/End: Complemental strand, 1366603 - 1366517
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaaca 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  1366603 accattagattgagtagtaccaccattgttattatagtctatccacactatattttcttcacatcatctctaaccttaacatcaaca 1366517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 216451 - 216533
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  216451 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 216533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 693011 - 693093
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  693011 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 693093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 697220 - 697302
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  697220 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 697302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 730074 - 730156
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  730074 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 730156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 853969 - 854051
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  853969 accattagattgagtagtaccaccattgttactatagtctatccacactttatttttttcacatcatctctaaccttaacaac 854051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 62091 - 62047
Alignment:
Q  391 aacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  62091 aacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 62047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 391 - 434
Target Start/End: Complemental strand, 1366464 - 1366421
Alignment:
Q  391 aacaacaacacactcttctctccttcgaaaatcaaaacaaaaca 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1366464 aacaacaacacactcttctctccttcgaaaatcaaaacaaaaca 1366421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 251 - 397
Target Start/End: Original strand, 13654932 - 13655077
Alignment:
Q  251 aggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtct 350  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||| || |||         ||||||||||||||||||||||||||||||||||||||||    
T  13654932 aggtgacatttaatttgggaaaggagacttctttcccaccataggaaagtctttttttt-accattagattgagtagtaccaccattgttattatagtct 13655030  T
Q  351 atccacattatatttgcttcacatcatctctaaccttaacaacaaca 397  Q
    ||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  13655031 atccacactatattttcttcacatcatctctaaccttaacatcaaca 13655077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 13655129 - 13655177
Alignment:
Q  387 taacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13655129 taacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 13655177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 4553787 - 4553829
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatc 353  Q
    |||||| |||| |||||||||| ||||||||||||||||||||    
T  4553787 accatttgattaagtagtaccatcattgttattatagtctatc 4553829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 252 - 393
Target Start/End: Complemental strand, 9574619 - 9574479
Alignment:
Q  252 ggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtcta 351  Q
    |||| ||||||||||| ||||| |||||||||||||||||||| || |||         ||||||| |||||||||||||||||||||||||||||||||    
T  9574619 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaagtctttttttt-accattaaattgagtagtaccaccattgttattatagtcta 9574521  T
Q  352 tccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  9574520 tccacactatattttcttcacatcatctctaaccttaacaac 9574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 311 - 397
Target Start/End: Complemental strand, 28684222 - 28684136
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaaca 397  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||    
T  28684222 accattagattgagtagtaccaccattgttattatagtctagccacactatattttcttcacatcatctctaaccttaacatcaaca 28684136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 311 - 397
Target Start/End: Complemental strand, 47199385 - 47199299
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaacaaca 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||| |||||    
T  47199385 accattagattgagtagtaccaccattgttattatagtctatccacacaatattttctttacatcatctctaaccttaacatcaaca 47199299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 55159238 - 55159319
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaa 392  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  55159238 accattagattgagtagtaccaccattattattatagtctatccacactataatttcttcacatcatctctaaccttaacaa 55159319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 43738463 - 43738381
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| | |||||  ||||||| |||| |||||||||||||    
T  43738463 accattagattgagtagtaccaccattattactatagtctatccacactctatttttttcacataatctttaaccttaacaac 43738381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 315 - 393
Target Start/End: Complemental strand, 47524181 - 47524104
Alignment:
Q  315 ttagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||  ||||||| ||||| ||||||||||||    
T  47524181 ttagattgagtagtaccaccattgttattatagcctatccacactatattt-tttcacattatctccaaccttaacaac 47524104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 28684084 - 28684036
Alignment:
Q  387 taacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28684084 taacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaa 28684036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 47199247 - 47199193
Alignment:
Q  387 taacaacaacaacacactcttctctccttcgaaaatcaaaacaaaacaatatgaa 441  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  47199247 taacaacaacaacacactcttctctccttcgaaaatcaaaacacaacaacatgaa 47199193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 39624246 - 39624195
Alignment:
Q  167 gattctatgaacaaactgataaaattcaagtctcaaatgtagggattctaat 218  Q
    ||||||||| || ||| ||||||||  |||||||||||||||||||||||||    
T  39624246 gattctatggacgaacagataaaatataagtctcaaatgtagggattctaat 39624195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 47198603 - 47198645
Alignment:
Q  250 gaggtgacatttaacttgagaaagaagacttctttcccaccat 292  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||    
T  47198603 gaggtgacatttaatttgggaaaggagacttctttcccaccat 47198645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 25371593 - 25371553
Alignment:
Q  252 ggtgacatttaacttgagaaagaagacttctttcccaccat 292  Q
    |||||||||||| ||| ||||| ||||||||||||||||||    
T  25371593 ggtgacatttaatttgggaaaggagacttctttcccaccat 25371553  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 37874951 - 37874869
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  37874951 accattagattgattagtaccatcattgttattatagtctatccacactatattttcttcacatcatctctaaccttaacaac 37874869  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 365
Target Start/End: Complemental strand, 35616824 - 35616710
Alignment:
Q  251 aggtgacatttaacttgagaaagaagacttctttcccaccatagaaaggtcnnnnnnnnnaccattagattgagtagtaccaccattgttattatagtct 350  Q
    ||||| ||||||||||| ||||| |||||||||||||||||| | || |||         ||||||||||||||||||||||||||||||||||||||||    
T  35616824 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtctttttttttaccattagattgagtagtaccaccattgttattatagtct 35616725  T
Q  351 atccacattatattt 365  Q
    ||||||| |||||||    
T  35616724 atccacactatattt 35616710  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 48870743 - 48870689
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatattt 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48870743 accattagattgagtagtaccaccattgttattatagtctatccacactatattt 48870689  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 17494470 - 17494522
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatat 363  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  17494470 accattagattgaatagtaccaccattgttattatagtctatccacactatat 17494522  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 48869760 - 48869809
Alignment:
Q  243 caaaagagaggtgacatttaacttgagaaagaagacttctttcccaccat 292  Q
    ||||||||||||||||||||||||| ||||| |||||||||| |||||||    
T  48869760 caaaagagaggtgacatttaacttgggaaaggagacttcttttccaccat 48869809  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 37874064 - 37874104
Alignment:
Q  252 ggtgacatttaacttgagaaagaagacttctttcccaccat 292  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  37874064 ggtgacatttaacttgggaaatgagacttctttcccaccat 37874104  T

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Target: scaffold1037 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 393
Target Start/End: Complemental strand, 2888 - 2807
Alignment:
Q  312 ccattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||| ||||||||||||||||||||||    
T  2888 ccattagattgagtagtaccaccattgttattatagtctatccacactctatttttttcgcatcatctctaaccttaacaac 2807  T

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Target: scaffold1031 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 312 - 393
Target Start/End: Complemental strand, 3007 - 2926
Alignment:
Q  312 ccattagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||| ||||||||||||||||||||||    
T  3007 ccattagattgagtagtaccaccattgttattatagtctatccacactctatttttttcgcatcatctctaaccttaacaac 2926  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 316 - 393
Target Start/End: Complemental strand, 5277380 - 5277303
Alignment:
Q  316 tagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  5277380 tagattaagtagtaccaccattgttattatagtctatccacactatattttcttcacatcatctccaaccttaacaac 5277303  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 315 - 393
Target Start/End: Original strand, 36475841 - 36475917
Alignment:
Q  315 ttagattgagtagtaccaccattgttattatagtctatccacattatatttgcttcacatcatctctaaccttaacaac 393  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||| ||||||||||||    
T  36475841 ttagattgagtagtaccaccattgttattatagtctatccacactatattt--ttcacatcatctccaaccttaacaac 36475917  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 5276459 - 5276505
Alignment:
Q  246 aagagaggtgacatttaacttgagaaagaagacttctttcccaccat 292  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  5276459 aagagaggtggcatttaacttgggaaaggagacttctttcccaccat 5276505  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 28104999 - 28105061
Alignment:
Q  167 gattctatgaacaaactgataaaattcaagtctcaaatgtagggattctaataattttgaata 229  Q
    ||||||||| || ||| ||||||||  || |||||| |||||||||||||||||||| |||||    
T  28104999 gattctatggacgaaccgataaaatcaaaatctcaagtgtagggattctaataatttagaata 28105061  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 17227938 - 17227884
Alignment:
Q  311 accattagattgagtagtaccaccattgttattatagtctatccacattatattt 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17227938 accattagattgagtagtaccaccattgttattatagtctatccacactatattt 17227884  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 24094287 - 24094336
Alignment:
Q  180 aactgataaaattcaagtctcaaatgtagggattctaataattttgaata 229  Q
    ||||||||||||  ||||||||| ||||||||||||||| |||| |||||    
T  24094287 aactgataaaatctaagtctcaagtgtagggattctaattatttagaata 24094336  T

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