View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_86 (Length: 223)
Name: NF15978_low_86
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_86 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6190668 - 6190464
Alignment:
| Q |
1 |
gaagatgaggctaaaaataagattactgaaagcaaagagctaatgtcgagtattaagaagtctaaaacttcgtatgatgctgccctgtcaaagcagcaga |
100 |
Q |
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| T |
6190668 |
gaagatgaggctaaaaataagattactgaaagcaaagagctaatgtcgagtattaagaagtctaaaacttcgtatgatgctgccctgtcaaagcagcaga |
6190569 |
T |
|
| Q |
101 |
agatgaaagataaatgggaaggtttcagagtagattttgcagacaactatggaagtagcagtagctgagaagtattgatgttggattcaagtgtgtgtgg |
200 |
Q |
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| T |
6190568 |
agatgaaagataaatgggaaggtttcagagtagattttgcagacaactatggaagtagcagtagctgagaagtattgatgttggattcaaatgtgtgtgg |
6190469 |
T |
|
| Q |
201 |
tgagt |
205 |
Q |
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||||| |
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| T |
6190468 |
tgagt |
6190464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 6183660 - 6183461
Alignment:
| Q |
1 |
gaagatgaggctaaaaataagattactgaaagcaaagagctaatgtcgagtattaagaagtctaaaacttcgtatgatgctgccctgtcaaagcagcaga |
100 |
Q |
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|||||||||||||| |||| |||||| ||| |||||||||| ||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |
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| T |
6183660 |
gaagatgaggctaagaatatgattaccgaaggcaaagagctgatggcgagtattaagaagtctaaatcttcatatactgctgccctgtcaaagcagcaga |
6183561 |
T |
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| Q |
101 |
agatgaaagataaatgggaaggtttcagagtagattttgcagacaactatggaagtagcagtagctgagaagtattgatgttggattcaagtgtgtgtgg |
200 |
Q |
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| T |
6183560 |
agttgaaagacaaatgggaaggtttcagagtagagtttgcagacaaccttggaagtagcagtagctgagaagtactgatgttgggttcaattgtgtgtgg |
6183461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 37454937 - 37455083
Alignment:
| Q |
1 |
gaagatgaggctaaaaataagattactgaaagcaaagagctaatgtcgagtattaagaagtctaaaacttcgtatgatgctgccctgtcaaagcagcaga |
100 |
Q |
| |
|
|||||||||||||| |||| | | |||||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||| ||||||| |||| | | |
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| T |
37454937 |
gaagatgaggctaagaatatgctagctgaaagcaaagagcttatgtcgagtattaagaattctaaatcttcgtatgatactgctctgtcaaggcagaata |
37455036 |
T |
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| Q |
101 |
agatgaaagataaatgggaaggtttcagagtagattttgcagacaac |
147 |
Q |
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| || |||| ||||||||||| || || ||| |||||||| |||| |
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| T |
37455037 |
aattggaagacaaatgggaaggctttaggatagcttttgcagccaac |
37455083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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