View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_90 (Length: 220)
Name: NF15978_low_90
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 28826206 - 28826018
Alignment:
| Q |
17 |
aatatttgtaaaagtgaattttctctgttgtgcaaatnnnnnnntaggaaaaacaaactaacagaatcattattgtcttagaacatgctctgcgttaatg |
116 |
Q |
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| T |
28826206 |
aatatttgtaaaagtgaattttctctgttgtgcaaataaaaaaataggaaaaacaaactaacagaatcattattgtcttagaacatgctctgcgttaatg |
28826107 |
T |
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| Q |
117 |
ttgaaattatgaaaaggactttagattaccttgtatacatcaccaaaacctccttctccaagtttattttcatcattgaagttttttgt |
205 |
Q |
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| T |
28826106 |
ttgaaatcatgaaaaggactttagattaccttgtatacatcaccaaaacctccttctccaagtttattttcatcgttgaagttttttgt |
28826018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 28819575 - 28819513
Alignment:
| Q |
143 |
taccttgtatacatcaccaaaacctccttctccaagtttattttcatcattgaagttttttgt |
205 |
Q |
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| T |
28819575 |
taccttgtatacatctccaaaaccgccttctcctagtttattttcatcgttaaaattttttgt |
28819513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 28834881 - 28834818
Alignment:
| Q |
142 |
ttaccttgtatacatcaccaaaacctccttctccaagtttattttcatcattgaagttttttgt |
205 |
Q |
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|||| ||||||||||||||||| || |||||||| |||||||||||| ||| ||||||||||| |
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| T |
28834881 |
ttactttgtatacatcaccaaagcccccttctcctagtttattttcaccatcaaagttttttgt |
28834818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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