View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1597_high_1 (Length: 295)
Name: NF1597_high_1
Description: NF1597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1597_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 6 - 283
Target Start/End: Complemental strand, 38710814 - 38710545
Alignment:
| Q |
6 |
agagagatgaacaacagtgagtccccaaaatacatgaacttttgcgacagtaccaaagcggctgaagacctcttctacttccttctcactataacaaaag |
105 |
Q |
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| T |
38710814 |
agagaaatgaacaacagtgagtccccaaaatacatgaacttttgcgacagtaccaaagcggcttaagacctcttctacttccttctcactataacaaaag |
38710715 |
T |
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| Q |
106 |
tttatacatctagatattagtaaagcagataattaaattgtcgaaattaagaatcattctttcttcgaaaagnnnnnnnnntgcatacgtacgtggttgt |
205 |
Q |
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| T |
38710714 |
tttatacatctagatattagtaaagcagataatt-----gttgaaattaagaatcattctttcttcgaaaagaaaaaaaaatgcatacgtacgtggttgt |
38710620 |
T |
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| Q |
206 |
aaatggcagattatggacaaaaacagtcaagagtgatnnnnnnnnctctttatgttattttctcctggagttgatgat |
283 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
38710619 |
aaatggcagattatggacaaaaacagtcgagagtgat--aaaaaactc-ttatgttattttctcctggagttgatgat |
38710545 |
T |
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