View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15980_high_3 (Length: 321)

Name: NF15980_high_3
Description: NF15980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15980_high_3
NF15980_high_3
[»] chr1 (1 HSPs)
chr1 (15-308)||(43207119-43207413)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 43207119 - 43207413
Alignment:
Q  15 aggtttcacatgttacttagagttcacaaatggcaagaaccttaaaggccttcgcaacatctcaataactctcagcaatgtaatttaatt-attttatct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||| || || |||||||||    
T  43207119 aggtttcacatgttacttagagttcacaaatggcaagaaccttaaaggccttcgcaacatctcaataactctcagctcagcaatgtagtttattttatct 43207218  T
Q  114 aggatgtaagctttaggtgcttcgcgacaatatgcgaaattaatgaataaatttctatccttagcgaactttgtttaaaattcctgttcagttcaggaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43207219 aggatgtaagctttaggtgcttcgcgacaatatgcgaaattaatgaataaatttctatccttagcgaactttgtttaaaattcctgttcagttcaggaac 43207318  T
Q  214 tgtacgaaaagctttagnnnnnnnatagtgctaattcgattcagtttagcagttcagttcagatttttggtgtttttgaatagccctagtttgat 308  Q
    |||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43207319 tgtacgaaaagcttcagtttttttatagtgctaattcgattcagtttagcagttcagttcagatttttggtgtttttgaatagccctagtttgat 43207413  T

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