View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15980_low_1 (Length: 560)

Name: NF15980_low_1
Description: NF15980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15980_low_1
NF15980_low_1
[»] chr8 (12 HSPs)
chr8 (20-168)||(29585169-29585317)
chr8 (306-560)||(17478318-17478572)
chr8 (38-237)||(17478609-17478808)
chr8 (24-237)||(4442283-4442499)
chr8 (360-560)||(32849148-32849348)
chr8 (38-161)||(4426934-4427057)
chr8 (38-160)||(32848929-32849051)
chr8 (402-560)||(4442015-4442170)
chr8 (38-165)||(4432769-4432896)
chr8 (76-165)||(4409938-4410027)
chr8 (114-163)||(24951790-24951839)
chr8 (118-163)||(24959531-24959576)
[»] chr4 (5 HSPs)
chr4 (38-237)||(8366239-8366439)
chr4 (38-237)||(8382240-8382440)
chr4 (313-560)||(8366483-8366728)
chr4 (274-560)||(8382450-8382731)
chr4 (38-181)||(46839736-46839879)
[»] chr5 (2 HSPs)
chr5 (24-236)||(8341632-8341841)
chr5 (385-556)||(8341375-8341547)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 29585169 - 29585317
Alignment:
Q  20 gaactatcagcaataatcatcattgtctttaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaa 119  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585169 gaactatcagcagtaatcatcattgtctctaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaa 29585268  T
Q  120 attgaataaaggtcaggtgggatacgagacaattaggaacacttggcag 168  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29585269 attgaataaaggtaaggtgggatacgagacaattaggaacacttggcag 29585317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 306 - 560
Target Start/End: Complemental strand, 17478572 - 17478318
Alignment:
Q  306 tattgtgcaataagatacaacttctaatttgtgtaatctatttcgcaaaaattagttaatttcacatcaaaattatatggaccaaattaaggttggatta 405  Q
    ||||||||||||||||| |||||||||||  |||||||||||||  ||||||| ||||||||||||||||||||| || || || |||||| || |||||    
T  17478572 tattgtgcaataagataaaacttctaattcatgtaatctatttcataaaaattggttaatttcacatcaaaattagatagagcagattaagcttcgatta 17478473  T
Q  406 aacaaaccttgtcacactgaattattagaacttgaagcatgggacatttctgaagcaaggtgagcagagaattggagttaaaccagggaagattgagctc 505  Q
     ||||||||||||   ||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  17478472 tacaaaccttgtcgttctgaattataagaacttgcagcatcggacatttctgaagcaagctgagcagagaattggagttaaaccagagaagaatgagctc 17478373  T
Q  506 tggtcgaagcaaatattgaaattcttgaaaacgtagatcatggggttcaccaagc 560  Q
    | | || | |||||| ||||||||||||||| ||||||  |||||||||||||||    
T  17478372 tagacgtatcaaatagtgaaattcttgaaaaagtagattgtggggttcaccaagc 17478318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 38 - 237
Target Start/End: Complemental strand, 17478808 - 17478609
Alignment:
Q  38 atcattgtctttaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggt 137  Q
    |||||||| |||||||| ||||| ||||||||||||  ||| ||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||    
T  17478808 atcattgtttttaaaacaagtccattttgcaaaacatactcgacaaatgacacctcatctggaaatcctcgcagtcctttaaattgaataaaggtcaggt 17478709  T
Q  138 gggatacgagacaattaggaacacttggcaggctagcccatcctaaaattggtgactgttcctgaaagcaacaaaggacttgaataagatgcaatattca 237  Q
    ||||||||||||||| |||||| |||| | |   ||||||||||||||||||| | |||| ||| | |||||||||||||||||||||||||||||||||    
T  17478708 gggatacgagacaatcaggaacccttgtctgtggagcccatcctaaaattggtaattgttgctgtaggcaacaaaggacttgaataagatgcaatattca 17478609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 24 - 237
Target Start/End: Complemental strand, 4442499 - 4442283
Alignment:
Q  24 tatcagcaataatcatcattgtctttaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattg 123  Q
    |||||| ||||||||| |||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||| ||||||  |||| ||||||||||    
T  4442499 tatcagaaataatcattattgtctttaaaaccaatccttcttgcaaaacatgctcaacaaatgacacctcatctggtaatcctaaaaatcctttaaattg 4442400  T
Q  124 aataaaggtcaggtgggatacgagacaattaggaacacttggcaggctagcccatcctaaaat---tggtgactgttcctgaaagcaacaaaggacttga 220  Q
    |||||||||||| |||||||||||||| |||||| || ||||  |   ||||||||| |||||   ||||||||||||||| | |||||||| |||||||    
T  4442399 aataaaggtcagatgggatacgagacatttaggagcatttggttgtggagcccatcccaaaattggtggtgactgttcctgtaggcaacaaaagacttga 4442300  T
Q  221 ataagatgcaatattca 237  Q
    |||||||||||| ||||    
T  4442299 ataagatgcaatgttca 4442283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 360 - 560
Target Start/End: Original strand, 32849148 - 32849348
Alignment:
Q  360 gttaatttcacatcaaaattatatggaccaaattaaggttggattaaacaaaccttgtcacactgaattattagaacttgaagcatgggacatttctgaa 459  Q
    |||||||||||||||||  ||||| ||||| |||||||||||||||||| ||||||||     ||||| || |||||||||||||| |||||||  ||||    
T  32849148 gttaatttcacatcaaatctatatagaccagattaaggttggattaaactaaccttgttcttttgaatcatgagaacttgaagcataggacattcttgaa 32849247  T
Q  460 gcaaggtgagcagagaattggagttaaaccagggaagattgagctctggtcgaagcaaatattgaaattcttgaaaacgtagatcatggggttcaccaag 559  Q
    ||||| |||||||| ||||| |  |||||||||||||| |||||||| | |||| |||||   |||||||||||||| ||||||||||||||||| ||||    
T  32849248 gcaagttgagcagataattgaatctaaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgtagatcatggggttcagcaag 32849347  T
Q  560 c 560  Q
    |    
T  32849348 c 32849348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 4426934 - 4427057
Alignment:
Q  38 atcattgtctttaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggt 137  Q
    |||| |||||||||||| ||||||||||| ||||||  |||| |||||||||||||||||| ||||||  ||||| |||||||||||||||| || ||||    
T  4426934 atcaatgtctttaaaacaagtcctttttgtaaaacatactcagcaaatgacacctcatctgaaaatccacgaaatcctttaaattgaataaaagttaggt 4427033  T
Q  138 gggatacgagacaattaggaacac 161  Q
    | ||||||||||||||||||||||    
T  4427034 gtgatacgagacaattaggaacac 4427057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 32848929 - 32849051
Alignment:
Q  38 atcattgtctttaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggt 137  Q
    |||| |||||||||||| |||||||||||||||||| ||||||||||||| |||||||| ||| |||||  |||| |||||||||  |||| ||| ||||    
T  32848929 atcaatgtctttaaaacaagtcctttttgcaaaacatgctcaacaaatgaaacctcatccggagatcctctaaatcctttaaattctataacggttaggt 32849028  T
Q  138 gggatacgagacaattaggaaca 160  Q
    ||||||||||||||| |||||||    
T  32849029 gggatacgagacaatcaggaaca 32849051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 402 - 560
Target Start/End: Complemental strand, 4442170 - 4442015
Alignment:
Q  402 attaaacaaaccttgtcacactgaattattagaacttgaagcatgggacatttctgaagcaaggtgagcagagaattggagttaaaccagggaagattga 501  Q
    ||||||||||||||||    ||||||| | |||||||| ||||  |||||||| ||||||||||  |||||| ||||||||||||||||||||||| |||    
T  4442170 attaaacaaaccttgtt---ctgaattttgagaacttgtagcacaggacatttttgaagcaaggaaagcagataattggagttaaaccagggaagaatga 4442074  T
Q  502 gctctggtcgaagcaaatattgaaattcttgaaaacgtagatcatggggttcaccaagc 560  Q
    |||||    ||||||||||  ||||||||||||||  ||||||| | ||||||||||||    
T  4442073 gctctaaatgaagcaaatagcgaaattcttgaaaaaatagatcacgaggttcaccaagc 4442015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 4432896 - 4432769
Alignment:
Q  38 atcattgtctttaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggt 137  Q
    ||||||||||| ||||| ||||||||||||| || |  |||| ||||| | | ||||||||||| ||||| |||| ||||||| |||||||| || ||||    
T  4432896 atcattgtcttcaaaacaagtcctttttgcagaatatactcagcaaataatagctcatctggaactcctttaaatcctttaaactgaataaaagttaggt 4432797  T
Q  138 gggatacgagacaattaggaacacttgg 165  Q
    | ||||||| ||||||||||||||||||    
T  4432796 gtgatacgatacaattaggaacacttgg 4432769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 4410027 - 4409938
Alignment:
Q  76 ctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagacaattaggaacacttgg 165  Q
    |||||||||| ||| ||||||||||| ||||||| |  |||||||||||||||| | ||  || ||||| |||||| |||||||||||||    
T  4410027 ctcaacaaataacaactcatctggaagtccttgatagcctttaaattgaataaaagccaattgtgatacaagacaactaggaacacttgg 4409938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 24951790 - 24951839
Alignment:
Q  114 ctttaaattgaataaaggtcaggtgggatacgagacaattaggaacactt 163  Q
    ||||||| |||||| |||||| ||||||||| ||||||||||||||||||    
T  24951790 ctttaaagtgaatataggtcaagtgggatacaagacaattaggaacactt 24951839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 24959576 - 24959531
Alignment:
Q  118 aaattgaataaaggtcaggtgggatacgagacaattaggaacactt 163  Q
    ||||| |||||||||||  |||||||||||||| ||||||||||||    
T  24959576 aaatttaataaaggtcaaatgggatacgagacacttaggaacactt 24959531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 8366239 - 8366439
Alignment:
Q  38 atcattgtctttaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggt 137  Q
    |||| |||||||||||| |||||||||||||||||| |||||| |||||  | |||||||| |||||||||||||| |||||||||||||||||| ||||    
T  8366239 atcactgtctttaaaacaagtcctttttgcaaaacatgctcaataaatgttatctcatctgaaaatccttgaaattttttaaattgaataaaggtaaggt 8366338  T
Q  138 gggatacgagacaattaggaacacttggcaggctagcccatcctaaaattggtgactgttcctgaaagcaac-aaaggacttgaataagatgcaatattc 236  Q
     ||||||||||||||||||| |||||||| |   |||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||    
T  8366339 aggatacgagacaattaggagcacttggctgtggagcccatcctaaaattggtgactgttcctgtaggcaacaaaaggtcttgaataagatgcaatattc 8366438  T
Q  237 a 237  Q
    |    
T  8366439 a 8366439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 8382240 - 8382440
Alignment:
Q  38 atcattgtctttaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggt 137  Q
    |||| |||||||||||| ||||||||||||||||||  |||||||||||| | |||||||| ||| ||| ||||| ||||||||| ||||||||| ||||    
T  8382240 atcactgtctttaaaacaagtcctttttgcaaaacatcctcaacaaatgatatctcatctgaaaaacctcgaaatcctttaaattcaataaaggtaaggt 8382339  T
Q  138 gggatacgagacaattaggaacacttggcaggctagcccatcctaaaattggtgactgttcctgaaagcaa-caaaggacttgaataagatgcaatattc 236  Q
    |||||||||||||||||||| || ||||| |   |||||||||||||||||||||||||| ||| | ||||  |||||||||||||||||||||||||||    
T  8382340 gggatacgagacaattaggagcagttggctgtggagcccatcctaaaattggtgactgtttctgcaggcaagaaaaggacttgaataagatgcaatattc 8382439  T
Q  237 a 237  Q
    |    
T  8382440 a 8382440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 313 - 560
Target Start/End: Original strand, 8366483 - 8366728
Alignment:
Q  313 caataagatacaacttctaatttgtgtaatctatttcgcaaaaattagttaatttcacatcaaaattatatggaccaaattaaggttggattaaacaaac 412  Q
    ||||||||| | ||||||||||| ||||||||||||   |||| || ||||||||| ||||||| || ||  || ||||||||| || ||||||||| ||    
T  8366483 caataagatgctacttctaatttatgtaatctattttataaaatttggttaatttcgcatcaaagttgta--gatcaaattaagctttgattaaacatac 8366580  T
Q  413 cttgtcacactgaattattagaacttgaagcatgggacatttctgaagcaaggtgagcagagaattggagttaaaccagggaagattgagctctggtcga 512  Q
    ||| | |   |||||| | ||||| ||||| || |||||||| ||||||||| |||| ||||||||||||| ||||||||||||| |||  |||    ||    
T  8366581 cttataattttgaattttaagaacctgaagaataggacatttgtgaagcaagctgagaagagaattggagtcaaaccagggaagaatgatatctaaatga 8366680  T
Q  513 agcaaatattgaaattcttgaaaacgtagatcatggggttcaccaagc 560  Q
    |||| |||   ||| ||||||||| |||||||| ||||||||||||||    
T  8366681 agcagatagcaaaaatcttgaaaaagtagatcacggggttcaccaagc 8366728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 274 - 560
Target Start/End: Original strand, 8382450 - 8382731
Alignment:
Q  274 taatcttgttatatattaagtggtataccgtatattgtgcaataagatacaacttctaatttgtgtaatc--tatttcgcaaaaattagttaatttcaca 371  Q
    ||||| |||||||||||||||||| |||       ||| ||||||||| | ||||||||||| |||||||  ||||||   | ||||  |||||||  ||    
T  8382450 taatcatgttatatattaagtggtgtac-------tgttcaataagatgctacttctaatttatgtaatcaatatttcattagaattgattaattttgca 8382542  T
Q  372 tcaaaattatatggaccaaattaaggttggattaaacaaaccttgtcacactgaattattagaacttgaagcatgggacatttctgaagcaaggtgagca 471  Q
    ||||| |||| | || ||||||||| || ||||||||||||||  |      ||||| | |||||| |||| || |||||||| ||||||||| |||| |    
T  8382543 tcaaagttatgtagatcaaattaagctttgattaaacaaacctccttgtttcgaattttaagaactcgaagaataggacatttgtgaagcaagctgagga 8382642  T
Q  472 gagaattggagttaaaccagggaagattgagctctggtcgaagcaaatattgaaattcttgaaaacgtagatcatggggttcaccaagc 560  Q
    ||||||||||| |||||||||||||| |||| |||    |||||||||    ||||||||||||| |||||||| ||||||||||||||    
T  8382643 gagaattggagctaaaccagggaagagtgagatctaaatgaagcaaattgcaaaattcttgaaaaagtagatcacggggttcaccaagc 8382731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 46839736 - 46839879
Alignment:
Q  38 atcattgtctttaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggt 137  Q
    ||||||||||| ||||| |||||||||| ||||| |  |||||||||| | | ||||||||||| ||||||| ||  |||||| |||||||| || ||||    
T  46839736 atcattgtcttcaaaacaagtccttttttcaaaatatactcaacaaataatagctcatctggaagtccttgatatcatttaaactgaataaaagttaggt 46839835  T
Q  138 gggatacgagacaattaggaacacttggcaggctagcccatcct 181  Q
    | |||| || ||||||||||||||||||  |  |||||||||||    
T  46839836 gtgatatgatacaattaggaacacttggttgtgtagcccatcct 46839879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 8341841 - 8341632
Alignment:
Q  24 tatcagcaataatcatcattgtctttaaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattg 123  Q
    ||||||||||||||| |   |||||||||||  |||| ||||||||||||  |||||||||||| |||||||||||||||||| ||||| |||||||||     
T  8341841 tatcagcaataatcaac---gtctttaaaacatgtccattttgcaaaacatactcaacaaatgaaacctcatctggaaatcctcgaaatcctttaaattc 8341745  T
Q  124 aataaaggtcaggtgggatacgagacaattaggaacacttggcaggctagcccatcctaaaattggtgactgttcctgaaagcaacaaaggacttgaata 223  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||| |   || |||| |||||||||| ||| ||||||| |||||||||||| | ||||||    
T  8341744 aataaagctcaggtgggatacaagacaattaggaatacttggctgtggagaccatgctaaaattggcgaccgttcctgtaagcaacaaagggcatgaata 8341645  T
Q  224 agatgcaatattc 236  Q
    |||||||||||||    
T  8341644 agatgcaatattc 8341632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 385 - 556
Target Start/End: Complemental strand, 8341547 - 8341375
Alignment:
Q  385 gaccaaattaaggttggattaaac-aaaccttgtcacactgaattattagaacttgaagcatgggacatttctgaagcaaggtgagcagagaattggagt 483  Q
    |||||||||||| ||||||||||  |||||||||||  ||||||||| |||  ||| |||| |||||||||||||| ||||  ||| |||||||| ||||    
T  8341547 gaccaaattaagcttggattaaatgaaaccttgtcattctgaattatgagaggttggagcaagggacatttctgaatcaagtggagaagagaatttgagt 8341448  T
Q  484 taaaccagggaagattgagctctggtcgaagcaaatattgaaattcttgaaaacgtagatcatggggttcacc 556  Q
    ||||||||| ||||  ||||||  | |||| |||||||||||||||||||||| | |  ||||||||||||||    
T  8341447 taaaccaggaaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacc 8341375  T

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