View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15980_low_2 (Length: 528)

Name: NF15980_low_2
Description: NF15980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15980_low_2
NF15980_low_2
[»] chr8 (12 HSPs)
chr8 (274-528)||(17478318-17478572)
chr8 (18-136)||(29585199-29585317)
chr8 (18-205)||(17478609-17478796)
chr8 (26-205)||(4442283-4442465)
chr8 (328-528)||(32849148-32849348)
chr8 (18-129)||(4426946-4427057)
chr8 (370-528)||(4442015-4442170)
chr8 (18-128)||(32848941-32849051)
chr8 (18-133)||(4432769-4432884)
chr8 (44-133)||(4409938-4410027)
chr8 (82-131)||(24951790-24951839)
chr8 (86-131)||(24959531-24959576)
[»] chr4 (5 HSPs)
chr4 (18-205)||(8366251-8366439)
chr4 (18-205)||(8382252-8382440)
chr4 (281-528)||(8366483-8366728)
chr4 (242-528)||(8382450-8382731)
chr4 (18-149)||(46839748-46839879)
[»] chr5 (2 HSPs)
chr5 (25-204)||(8341632-8341811)
chr5 (353-524)||(8341375-8341547)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 274 - 528
Target Start/End: Complemental strand, 17478572 - 17478318
Alignment:
Q  274 tattgtgcaataagatacaacttctaatttgtgtaatctatttcgcaaaaattagttaatttcacatcaaaattatatggaccaaattaaggttggatta 373  Q
    ||||||||||||||||| |||||||||||  |||||||||||||  ||||||| ||||||||||||||||||||| || || || |||||| || |||||    
T  17478572 tattgtgcaataagataaaacttctaattcatgtaatctatttcataaaaattggttaatttcacatcaaaattagatagagcagattaagcttcgatta 17478473  T
Q  374 aacaaaccttgtcacactgaattattagaacttgaagcatgggacatttctgaagcaaggtgagcagagaattggagttaaaccagggaagattgagctc 473  Q
     ||||||||||||   ||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  17478472 tacaaaccttgtcgttctgaattataagaacttgcagcatcggacatttctgaagcaagctgagcagagaattggagttaaaccagagaagaatgagctc 17478373  T
Q  474 tggtcgaagcaaatattgaaattcttgaaaacgtagatcatggggttcaccaagc 528  Q
    | | || | |||||| ||||||||||||||| ||||||  |||||||||||||||    
T  17478372 tagacgtatcaaatagtgaaattcttgaaaaagtagattgtggggttcaccaagc 17478318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 29585199 - 29585317
Alignment:
Q  18 aaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29585199 aaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtaaggtgggatacgagac 29585298  T
Q  118 aattaggaacacttggcag 136  Q
    |||||||||||||||||||    
T  29585299 aattaggaacacttggcag 29585317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 17478796 - 17478609
Alignment:
Q  18 aaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagac 117  Q
    ||||| ||||| ||||||||||||  ||| ||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||    
T  17478796 aaaacaagtccattttgcaaaacatactcgacaaatgacacctcatctggaaatcctcgcagtcctttaaattgaataaaggtcaggtgggatacgagac 17478697  T
Q  118 aattaggaacacttggcaggctagcccatcctaaaattggtgactgttcctgaaagcaacaaaggacttgaataagatgcaatattca 205  Q
    ||| |||||| |||| | |   ||||||||||||||||||| | |||| ||| | |||||||||||||||||||||||||||||||||    
T  17478696 aatcaggaacccttgtctgtggagcccatcctaaaattggtaattgttgctgtaggcaacaaaggacttgaataagatgcaatattca 17478609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 4442465 - 4442283
Alignment:
Q  26 tcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagacaattagga 125  Q
    ||||| |||||||||| ||||||||||||||||||||||||| ||||||  |||| |||||||||||||||||||||| |||||||||||||| ||||||    
T  4442465 tccttcttgcaaaacatgctcaacaaatgacacctcatctggtaatcctaaaaatcctttaaattgaataaaggtcagatgggatacgagacatttagga 4442366  T
Q  126 acacttggcaggctagcccatcctaaaat---tggtgactgttcctgaaagcaacaaaggacttgaataagatgcaatattca 205  Q
     || ||||  |   ||||||||| |||||   ||||||||||||||| | |||||||| ||||||||||||||||||| ||||    
T  4442365 gcatttggttgtggagcccatcccaaaattggtggtgactgttcctgtaggcaacaaaagacttgaataagatgcaatgttca 4442283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 328 - 528
Target Start/End: Original strand, 32849148 - 32849348
Alignment:
Q  328 gttaatttcacatcaaaattatatggaccaaattaaggttggattaaacaaaccttgtcacactgaattattagaacttgaagcatgggacatttctgaa 427  Q
    |||||||||||||||||  ||||| ||||| |||||||||||||||||| ||||||||     ||||| || |||||||||||||| |||||||  ||||    
T  32849148 gttaatttcacatcaaatctatatagaccagattaaggttggattaaactaaccttgttcttttgaatcatgagaacttgaagcataggacattcttgaa 32849247  T
Q  428 gcaaggtgagcagagaattggagttaaaccagggaagattgagctctggtcgaagcaaatattgaaattcttgaaaacgtagatcatggggttcaccaag 527  Q
    ||||| |||||||| ||||| |  |||||||||||||| |||||||| | |||| |||||   |||||||||||||| ||||||||||||||||| ||||    
T  32849248 gcaagttgagcagataattgaatctaaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgtagatcatggggttcagcaag 32849347  T
Q  528 c 528  Q
    |    
T  32849348 c 32849348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 4426946 - 4427057
Alignment:
Q  18 aaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagac 117  Q
    ||||| ||||||||||| ||||||  |||| |||||||||||||||||| ||||||  ||||| |||||||||||||||| || ||||| ||||||||||    
T  4426946 aaaacaagtcctttttgtaaaacatactcagcaaatgacacctcatctgaaaatccacgaaatcctttaaattgaataaaagttaggtgtgatacgagac 4427045  T
Q  118 aattaggaacac 129  Q
    ||||||||||||    
T  4427046 aattaggaacac 4427057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 370 - 528
Target Start/End: Complemental strand, 4442170 - 4442015
Alignment:
Q  370 attaaacaaaccttgtcacactgaattattagaacttgaagcatgggacatttctgaagcaaggtgagcagagaattggagttaaaccagggaagattga 469  Q
    ||||||||||||||||    ||||||| | |||||||| ||||  |||||||| ||||||||||  |||||| ||||||||||||||||||||||| |||    
T  4442170 attaaacaaaccttgtt---ctgaattttgagaacttgtagcacaggacatttttgaagcaaggaaagcagataattggagttaaaccagggaagaatga 4442074  T
Q  470 gctctggtcgaagcaaatattgaaattcttgaaaacgtagatcatggggttcaccaagc 528  Q
    |||||    ||||||||||  ||||||||||||||  ||||||| | ||||||||||||    
T  4442073 gctctaaatgaagcaaatagcgaaattcttgaaaaaatagatcacgaggttcaccaagc 4442015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 32848941 - 32849051
Alignment:
Q  18 aaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagac 117  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||||| ||| |||||  |||| |||||||||  |||| ||| ||||||||||||||||    
T  32848941 aaaacaagtcctttttgcaaaacatgctcaacaaatgaaacctcatccggagatcctctaaatcctttaaattctataacggttaggtgggatacgagac 32849040  T
Q  118 aattaggaaca 128  Q
    ||| |||||||    
T  32849041 aatcaggaaca 32849051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 4432884 - 4432769
Alignment:
Q  18 aaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagac 117  Q
    ||||| ||||||||||||| || |  |||| ||||| | | ||||||||||| ||||| |||| ||||||| |||||||| || ||||| ||||||| ||    
T  4432884 aaaacaagtcctttttgcagaatatactcagcaaataatagctcatctggaactcctttaaatcctttaaactgaataaaagttaggtgtgatacgatac 4432785  T
Q  118 aattaggaacacttgg 133  Q
    ||||||||||||||||    
T  4432784 aattaggaacacttgg 4432769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 4410027 - 4409938
Alignment:
Q  44 ctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagacaattaggaacacttgg 133  Q
    |||||||||| ||| ||||||||||| ||||||| |  |||||||||||||||| | ||  || ||||| |||||| |||||||||||||    
T  4410027 ctcaacaaataacaactcatctggaagtccttgatagcctttaaattgaataaaagccaattgtgatacaagacaactaggaacacttgg 4409938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 24951790 - 24951839
Alignment:
Q  82 ctttaaattgaataaaggtcaggtgggatacgagacaattaggaacactt 131  Q
    ||||||| |||||| |||||| ||||||||| ||||||||||||||||||    
T  24951790 ctttaaagtgaatataggtcaagtgggatacaagacaattaggaacactt 24951839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 24959576 - 24959531
Alignment:
Q  86 aaattgaataaaggtcaggtgggatacgagacaattaggaacactt 131  Q
    ||||| |||||||||||  |||||||||||||| ||||||||||||    
T  24959576 aaatttaataaaggtcaaatgggatacgagacacttaggaacactt 24959531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 8366251 - 8366439
Alignment:
Q  18 aaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagac 117  Q
    ||||| |||||||||||||||||| |||||| |||||  | |||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||    
T  8366251 aaaacaagtcctttttgcaaaacatgctcaataaatgttatctcatctgaaaatccttgaaattttttaaattgaataaaggtaaggtaggatacgagac 8366350  T
Q  118 aattaggaacacttggcaggctagcccatcctaaaattggtgactgttcctgaaagcaac-aaaggacttgaataagatgcaatattca 205  Q
    |||||||| |||||||| |   |||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||    
T  8366351 aattaggagcacttggctgtggagcccatcctaaaattggtgactgttcctgtaggcaacaaaaggtcttgaataagatgcaatattca 8366439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 8382252 - 8382440
Alignment:
Q  18 aaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagac 117  Q
    ||||| ||||||||||||||||||  |||||||||||| | |||||||| ||| ||| ||||| ||||||||| ||||||||| ||||||||||||||||    
T  8382252 aaaacaagtcctttttgcaaaacatcctcaacaaatgatatctcatctgaaaaacctcgaaatcctttaaattcaataaaggtaaggtgggatacgagac 8382351  T
Q  118 aattaggaacacttggcaggctagcccatcctaaaattggtgactgttcctgaaagcaa-caaaggacttgaataagatgcaatattca 205  Q
    |||||||| || ||||| |   |||||||||||||||||||||||||| ||| | ||||  ||||||||||||||||||||||||||||    
T  8382352 aattaggagcagttggctgtggagcccatcctaaaattggtgactgtttctgcaggcaagaaaaggacttgaataagatgcaatattca 8382440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 528
Target Start/End: Original strand, 8366483 - 8366728
Alignment:
Q  281 caataagatacaacttctaatttgtgtaatctatttcgcaaaaattagttaatttcacatcaaaattatatggaccaaattaaggttggattaaacaaac 380  Q
    ||||||||| | ||||||||||| ||||||||||||   |||| || ||||||||| ||||||| || ||  || ||||||||| || ||||||||| ||    
T  8366483 caataagatgctacttctaatttatgtaatctattttataaaatttggttaatttcgcatcaaagttgta--gatcaaattaagctttgattaaacatac 8366580  T
Q  381 cttgtcacactgaattattagaacttgaagcatgggacatttctgaagcaaggtgagcagagaattggagttaaaccagggaagattgagctctggtcga 480  Q
    ||| | |   |||||| | ||||| ||||| || |||||||| ||||||||| |||| ||||||||||||| ||||||||||||| |||  |||    ||    
T  8366581 cttataattttgaattttaagaacctgaagaataggacatttgtgaagcaagctgagaagagaattggagtcaaaccagggaagaatgatatctaaatga 8366680  T
Q  481 agcaaatattgaaattcttgaaaacgtagatcatggggttcaccaagc 528  Q
    |||| |||   ||| ||||||||| |||||||| ||||||||||||||    
T  8366681 agcagatagcaaaaatcttgaaaaagtagatcacggggttcaccaagc 8366728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 242 - 528
Target Start/End: Original strand, 8382450 - 8382731
Alignment:
Q  242 taatcttgttatatattaagtggtataccgtatattgtgcaataagatacaacttctaatttgtgtaatc--tatttcgcaaaaattagttaatttcaca 339  Q
    ||||| |||||||||||||||||| |||       ||| ||||||||| | ||||||||||| |||||||  ||||||   | ||||  |||||||  ||    
T  8382450 taatcatgttatatattaagtggtgtac-------tgttcaataagatgctacttctaatttatgtaatcaatatttcattagaattgattaattttgca 8382542  T
Q  340 tcaaaattatatggaccaaattaaggttggattaaacaaaccttgtcacactgaattattagaacttgaagcatgggacatttctgaagcaaggtgagca 439  Q
    ||||| |||| | || ||||||||| || ||||||||||||||  |      ||||| | |||||| |||| || |||||||| ||||||||| |||| |    
T  8382543 tcaaagttatgtagatcaaattaagctttgattaaacaaacctccttgtttcgaattttaagaactcgaagaataggacatttgtgaagcaagctgagga 8382642  T
Q  440 gagaattggagttaaaccagggaagattgagctctggtcgaagcaaatattgaaattcttgaaaacgtagatcatggggttcaccaagc 528  Q
    ||||||||||| |||||||||||||| |||| |||    |||||||||    ||||||||||||| |||||||| ||||||||||||||    
T  8382643 gagaattggagctaaaccagggaagagtgagatctaaatgaagcaaattgcaaaattcttgaaaaagtagatcacggggttcaccaagc 8382731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 46839748 - 46839879
Alignment:
Q  18 aaaacgagtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagac 117  Q
    ||||| |||||||||| ||||| |  |||||||||| | | ||||||||||| ||||||| ||  |||||| |||||||| || ||||| |||| || ||    
T  46839748 aaaacaagtccttttttcaaaatatactcaacaaataatagctcatctggaagtccttgatatcatttaaactgaataaaagttaggtgtgatatgatac 46839847  T
Q  118 aattaggaacacttggcaggctagcccatcct 149  Q
    ||||||||||||||||  |  |||||||||||    
T  46839848 aattaggaacacttggttgtgtagcccatcct 46839879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 8341811 - 8341632
Alignment:
Q  25 gtcctttttgcaaaacaagctcaacaaatgacacctcatctggaaatccttgaaattctttaaattgaataaaggtcaggtgggatacgagacaattagg 124  Q
    |||| ||||||||||||  |||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||| |||||||||||    
T  8341811 gtccattttgcaaaacatactcaacaaatgaaacctcatctggaaatcctcgaaatcctttaaattcaataaagctcaggtgggatacaagacaattagg 8341712  T
Q  125 aacacttggcaggctagcccatcctaaaattggtgactgttcctgaaagcaacaaaggacttgaataagatgcaatattc 204  Q
    || ||||||| |   || |||| |||||||||| ||| ||||||| |||||||||||| | |||||||||||||||||||    
T  8341711 aatacttggctgtggagaccatgctaaaattggcgaccgttcctgtaagcaacaaagggcatgaataagatgcaatattc 8341632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 353 - 524
Target Start/End: Complemental strand, 8341547 - 8341375
Alignment:
Q  353 gaccaaattaaggttggattaaac-aaaccttgtcacactgaattattagaacttgaagcatgggacatttctgaagcaaggtgagcagagaattggagt 451  Q
    |||||||||||| ||||||||||  |||||||||||  ||||||||| |||  ||| |||| |||||||||||||| ||||  ||| |||||||| ||||    
T  8341547 gaccaaattaagcttggattaaatgaaaccttgtcattctgaattatgagaggttggagcaagggacatttctgaatcaagtggagaagagaatttgagt 8341448  T
Q  452 taaaccagggaagattgagctctggtcgaagcaaatattgaaattcttgaaaacgtagatcatggggttcacc 524  Q
    ||||||||| ||||  ||||||  | |||| |||||||||||||||||||||| | |  ||||||||||||||    
T  8341447 taaaccaggaaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacc 8341375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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