View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15980_low_5 (Length: 260)

Name: NF15980_low_5
Description: NF15980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15980_low_5
NF15980_low_5
[»] chr8 (5 HSPs)
chr8 (1-183)||(13410179-13410361)
chr8 (27-90)||(8629122-8629185)
chr8 (84-130)||(35453690-35453736)
chr8 (154-183)||(4558672-4558701)
chr8 (92-176)||(12224974-12225058)
[»] chr2 (7 HSPs)
chr2 (158-247)||(39621793-39621882)
chr2 (84-148)||(18962105-18962169)
chr2 (84-148)||(28902016-28902080)
chr2 (38-148)||(37033983-37034091)
chr2 (28-93)||(1939323-1939388)
chr2 (85-130)||(37292415-37292460)
chr2 (35-79)||(16867767-16867811)
[»] chr4 (3 HSPs)
chr4 (84-148)||(30338659-30338723)
chr4 (111-148)||(32066503-32066540)
chr4 (35-127)||(35743264-35743354)
[»] chr3 (2 HSPs)
chr3 (35-127)||(49586934-49587026)
chr3 (84-146)||(25183055-25183117)
[»] chr6 (6 HSPs)
chr6 (84-127)||(1402956-1402999)
chr6 (87-148)||(2034509-2034569)
chr6 (87-148)||(7713964-7714025)
chr6 (27-68)||(33832263-33832304)
chr6 (84-148)||(30522507-30522571)
chr6 (153-181)||(34404314-34404342)
[»] chr5 (4 HSPs)
chr5 (89-148)||(37063146-37063205)
chr5 (86-127)||(39823190-39823231)
chr5 (35-79)||(33533537-33533581)
chr5 (84-148)||(35135729-35135793)
[»] chr1 (8 HSPs)
chr1 (46-92)||(625587-625633)
chr1 (35-93)||(17269264-17269322)
chr1 (35-93)||(47917250-47917308)
chr1 (84-130)||(52286635-52286681)
chr1 (101-146)||(9507084-9507129)
chr1 (84-148)||(4256109-4256173)
chr1 (84-148)||(17420142-17420206)
chr1 (53-93)||(23373328-23373368)
[»] chr7 (2 HSPs)
chr7 (84-148)||(31002700-31002764)
chr7 (46-90)||(40439071-40439115)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 13410179 - 13410361
Alignment:
1 ttttaagagagcatatagaaacaaacaaacaacatatgacatatttataagttgtttttaacttatttctgtaagctcttcagtatagcttatatgaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
13410179 ttttaagagagcatatagaaacaaacaaacaacatatgacatatttataagttgtttttaacttatttctgtaagctcttcagtatagcttatatgaaaa 13410278  T
101 tagtttaacattattttaacttttgttgtaaaagtagtttatacataatggattaattaagttgtttatccaaacaagaccat 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13410279 tagtttaacattattttaacttttgttgtaaaagtagtttatacataatggattaattaagttgtttatccaaacaagaccat 13410361  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 8629185 - 8629122
Alignment:
27 aaacaacatatgacatatttataagttgtttttaacttatttctgtaagctcttcagtatagct 90  Q
    ||||||| ||| | ||||| ||||||||||||||||||||||||  ||||||| || |||||||    
8629185 aaacaacttataaaatattcataagttgtttttaacttatttctacaagctctccaatatagct 8629122  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 35453690 - 35453736
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgta 130  Q
    |||| ||||||||||| ||||||||| |||||||| |||||||||||    
35453690 tataacttatatgaaactagtttaactttattttatcttttgttgta 35453736  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 4558701 - 4558672
Alignment:
154 taattaagttgtttatccaaacaagaccat 183  Q
    ||||||||||||||||||||||||||||||    
4558701 taattaagttgtttatccaaacaagaccat 4558672  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 12224974 - 12225058
Alignment:
92 atatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataatggattaattaagttgtttatccaaaca 176  Q
    |||||||| |||||| || |||||||| |||||||  || || ||  ||||||||||    ||||||||||||||||||||||||    
12224974 atatgaaaatagtttgactttattttatcttttgtcttagaaataacttatacataagctcttaattaagttgtttatccaaaca 12225058  T

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Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 39621882 - 39621793
Alignment:
158 taagttgtttatccaaacaagaccatcagaaaatcatccagttaagaaccttcaagtgttaaatgttacaaagccaataataattcacct 247  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
39621882 taagttgtttatccaaacaagaccatcagaaaagcatccagataagaaccttcaagtgttaaatgttacaaagccaataataattcacct 39621793  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 18962105 - 18962169
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    ||||||||||||||||  |||||||| |||||||| |||||||| ||||| ||| | ||||||||    
18962105 tatagcttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataa 18962169  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 28902080 - 28902016
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    ||||||||||||||||  |||||||  |||||||||||| |||| ||||| ||| ||||||||||    
28902080 tatagcttatatgaaaacagtttaattttattttaacttatgttataaaaatagcttatacataa 28902016  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 37034091 - 37033983
Alignment:
38 gacatatttataagttgtttttaacttatttctgtaagctcttcagtatagcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtag 137  Q
    ||||| ||||||| ||||||| ||||||||||| |||||||| ||  ||| ||  ||||||| | |||| || |||||||| ||||| || || || |||    
37034091 gacatgtttataaattgttttcaacttatttctataagctctccataatatct--tatgaaaatcgtttgactttattttatctttttttatagaaatag 37033994  T
138 tttatacataa 148  Q
    |||||||||||    
37033993 tttatacataa 37033983  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 1939323 - 1939388
Alignment:
28 aacaacatatgacatatttataagttgtttttaacttatttctgtaagctcttcagtatagcttat 93  Q
    |||||| |||||||| |  ||||| |||||| ||||||||||  |||||||| |||||||||||||    
1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttat 1939388  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 37292415 - 37292460
Alignment:
85 atagcttatatgaaagtagtttaacattattttaacttttgttgta 130  Q
    ||||||||||||||| |||||| || |||||||| |||||||||||    
37292415 atagcttatatgaaaatagttttactttattttatcttttgttgta 37292460  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 16867811 - 16867767
Alignment:
35 tatgacatatttataagttgtttttaacttatttctgtaagctct 79  Q
    ||||||||||| |||||||||||| ||||||||||  ||||||||    
16867811 tatgacatattcataagttgttttcaacttatttccataagctct 16867767  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 30338659 - 30338723
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    ||||||||||||||||  |||||||| ||||| || |||||||| || || ||||||||||||||    
30338659 tatagcttatatgaaaacagtttaactttattctatcttttgttatagaaatagtttatacataa 30338723  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 32066503 - 32066540
Alignment:
111 ttattttaacttttgttgtaaaagtagtttatacataa 148  Q
    |||||||| |||||||| ||||||||||||||||||||    
32066503 ttattttatcttttgttataaaagtagtttatacataa 32066540  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 35743354 - 35743264
Alignment:
35 tatgacatatttataagttgtttttaacttatttctgtaagctcttcagtatagcttatatgaaagtagtttaacattattttaacttttgtt 127  Q
    |||||||| ||||||||||||||  ||||||||||  ||| |||||||  ||||  | ||||||||||||||  | |||||||| ||||||||    
35743354 tatgacatgtttataagttgtttccaacttatttccataaactcttcatgatag--tttatgaaagtagtttgcctttattttatcttttgtt 35743264  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 49586934 - 49587026
Alignment:
35 tatgacatatttataagttgtttttaacttatttctgtaagctcttcagtatagcttatatgaaagtagtttaacattattttaacttttgtt 127  Q
    ||||||||||  |||||||||||| |  |||||||| ||| |||| ||  |||||||||||||||  ||||| || |||||||| ||||||||    
49586934 tatgacatatccataagttgttttcagtttatttctttaatctctccaagatagcttatatgaaaacagtttgactttattttatcttttgtt 49587026  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 25183055 - 25183117
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacat 146  Q
    ||||||| |||||||| ||| ||||| |||||| | |||||||| ||||| ||||||||||||    
25183055 tatagctcatatgaaaatagcttaactttatttaatcttttgttataaaaatagtttatacat 25183117  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 1402999 - 1402956
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgtt 127  Q
    |||||||||||||||| ||||||||| |||||||| ||||||||    
1402999 tatagcttatatgaaaatagtttaactttattttatcttttgtt 1402956  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 2034509 - 2034569
Alignment:
87 agcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    |||||||||||||||||||| || |||||||| | ||||||||||||  || ||||||||||    
2034509 agcttatatgaaagtagtttgactttattttatc-tttgttgtaaaaacagcttatacataa 2034569  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 7714025 - 7713964
Alignment:
87 agcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    |||||||||||||  | ||| || |||||||| |||||||| | ||||||||||||||||||    
7714025 agcttatatgaaaacaatttgactttattttatcttttgttatgaaagtagtttatacataa 7713964  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 33832263 - 33832304
Alignment:
27 aaacaacatatgacatatttataagttgtttttaacttattt 68  Q
    ||||||| |||||||| ||||||||||||||||| |||||||    
33832263 aaacaacttatgacatgtttataagttgtttttagcttattt 33832304  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 30522507 - 30522571
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    |||||||||||||||| |||||| || ||||||||| ||||||| |  |||||  ||||||||||    
30522507 tatagcttatatgaaaatagtttcactttattttaaattttgttttggaagtatcttatacataa 30522571  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 34404342 - 34404314
Alignment:
153 ttaattaagttgtttatccaaacaagacc 181  Q
    |||||||||||||||||||||||||||||    
34404342 ttaattaagttgtttatccaaacaagacc 34404314  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 37063146 - 37063205
Alignment:
89 cttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    ||||||||||| |||||| || |||||||| |||||||| || || ||||||||||||||    
37063146 cttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataa 37063205  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 39823190 - 39823231
Alignment:
86 tagcttatatgaaagtagtttaacattattttaacttttgtt 127  Q
    ||||||||||||||||||||| || |||||||| ||||||||    
39823190 tagcttatatgaaagtagtttgactttattttatcttttgtt 39823231  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 33533537 - 33533581
Alignment:
35 tatgacatatttataagttgtttttaacttatttctgtaagctct 79  Q
    ||||||||||| |||||||||||| ||||||||||  ||||||||    
33533537 tatgacatattcataagttgttttcaacttatttccataagctct 33533581  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 35135729 - 35135793
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    |||||||||||||||| |||||| || |||||||| |||||||| || || ||  ||||||||||    
35135729 tatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataa 35135793  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 625633 - 625587
Alignment:
46 tataagttgtttttaacttatttctgtaagctcttcagtatagctta 92  Q
    ||||||||||||| ||||||||||| |||||||||||| ||| ||||    
625633 tataagttgttttcaacttatttctataagctcttcagaatatctta 625587  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 17269322 - 17269264
Alignment:
35 tatgacatatttataagttgtttttaacttatttctgtaagctcttcagtatagcttat 93  Q
    |||||||| || || |||||||||||||||||| | ||||||||| ||| |||||||||    
17269322 tatgacatgttcatgagttgtttttaacttattaccgtaagctctccaggatagcttat 17269264  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 47917308 - 47917250
Alignment:
35 tatgacatatttataagttgtttttaacttatttctgtaagctcttcagtatagcttat 93  Q
    |||||||| || |||||||||||| ||||||||||| ||| || ||| |||||||||||    
47917308 tatgacatgttcataagttgttttcaacttatttctttaaacttttcggtatagcttat 47917250  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 52286681 - 52286635
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgta 130  Q
    |||||||||||||||| | ||||||| |||||||| |||||||||||    
52286681 tatagcttatatgaaaattgtttaactttattttatcttttgttgta 52286635  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 9507084 - 9507129
Alignment:
101 tagtttaacattattttaacttttgttgtaaaagtagtttatacat 146  Q
    ||||||||||||||||||||||||||| || || ||| ||||||||    
9507084 tagtttaacattattttaacttttgttatagaaatagcttatacat 9507129  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 4256109 - 4256173
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    ||||||||||| |||| || |||||| ||||| || ||||||||||| || ||| ||||||||||    
4256109 tatagcttatacgaaaataatttaactttattgtatcttttgttgtagaaatagcttatacataa 4256173  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 17420206 - 17420142
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    |||||||||||||||| | |||  || |||||||| ||||| || ||||| ||||||||||||||    
17420206 tatagcttatatgaaaattgttcgactttattttatcttttcttataaaaatagtttatacataa 17420142  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 23373328 - 23373368
Alignment:
53 tgtttttaacttatttctgtaagctcttcagtatagcttat 93  Q
    |||||| | |||||||||||||||||||||| |||||||||    
23373328 tgttttcagcttatttctgtaagctcttcaggatagcttat 23373368  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 31002764 - 31002700
Alignment:
84 tatagcttatatgaaagtagtttaacattattttaacttttgttgtaaaagtagtttatacataa 148  Q
    |||||||||||||||| || ||| || |||||||| ||||||| ||  || ||||||||||||||    
31002764 tatagcttatatgaaaatattttgactttattttatcttttgtggttgaaatagtttatacataa 31002700  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 40439115 - 40439071
Alignment:
46 tataagttgtttttaacttatttctgtaagctcttcagtatagct 90  Q
    |||||| |||||||||||||||||  |||||||||||| ||||||    
40439115 tataagctgtttttaacttatttccataagctcttcaggatagct 40439071  T

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