View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15980_low_6 (Length: 248)
Name: NF15980_low_6
Description: NF15980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15980_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 13886941 - 13887083
Alignment:
| Q |
99 |
tatattctccatgtgtttgttgaatacctaagaatgactttttggttagtaccgtattttaagtaaggggtttatgaagcatatcaccaaatttaatact |
198 |
Q |
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| T |
13886941 |
tatattctccatgtgtttgttgaatacctaagaatgactttttggttagtaccgtattttaagtaaggggtttctgaagcatatcaccaaatttaatact |
13887040 |
T |
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| Q |
199 |
ctctca-gcctta-caaatgattatttgtcaacatgttgatga |
239 |
Q |
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| T |
13887041 |
ctctcaggcctcagctaatgattatttctcaacatgttgatga |
13887083 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 13886819 - 13886904
Alignment:
| Q |
18 |
aggaaaaatgtagtggaatttgtataaatgagt--aaagtttcattggtagtgttgtggattctcatcttctttgctagcttctat |
101 |
Q |
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| T |
13886819 |
aggaaaaatgtagtggaatttgtataaatgagtaaaaagtttcattggtgctgttctggattctcatcttctttgctaacttctat |
13886904 |
T |
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