View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15981_high_10 (Length: 264)
Name: NF15981_high_10
Description: NF15981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15981_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 44828521 - 44828764
Alignment:
| Q |
17 |
agttgacattaattgcggtggaatgttaataatatacacaaagacaacactttcaagataacttttcaattcttcnnnnnnnnnnnnnnnncttttttca |
116 |
Q |
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| T |
44828521 |
agttgacattaattgcggtggaatgttaataatatacacaaagacaacactttcaagataacttttcaattcttcaaaaaaaaaaaaaaaacttttttca |
44828620 |
T |
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| Q |
117 |
agtgtcaatcaacaaattatacatgtaatatcaatatttagcctttatatagaatgttaggcagtacagatcttaaagaatgtcacttgcaacctaaata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828621 |
agtgtcaatcaacaaattatacatgtaatatcaatatttagcctttatatagaatgttaggcagtacagatcttaaagaatgtcacttgcaacctaaata |
44828720 |
T |
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| Q |
217 |
attccttccaaacgtggctaagaaatgtaggattcttctcactc |
260 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
44828721 |
attccttccaaacgtggctaagaaatgtaggatccttgtcactc |
44828764 |
T |
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