View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15981_high_3 (Length: 559)
Name: NF15981_high_3
Description: NF15981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15981_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 19026202 - 19026746
Alignment:
| Q |
1 |
tctttaatgtggttagctgcagacaccaaaatgaaatcacacaaacatgacaatattagataacaatttcaagtttgaattaatacaaagaaagaatggt |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19026202 |
tctttaatgtggttagctgcagataccaaaatgaaatcacacaaacatgagaatattagataacaatttcaagtttgaattaatacaaagaaagaatggt |
19026301 |
T |
|
| Q |
101 |
taaagggcaatatttgtttggtgttgaatcattaacttgattatgtaacagggatttacactcacttcttgcaatgatagaaactaaaaacgcattattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19026302 |
taaagggcaatatttgtttggtgttgaatcattaacttgattatgtaacagggatttacactcacttcttgcaatgatagaaactaaaaatgcattattc |
19026401 |
T |
|
| Q |
201 |
acatgttcaaaatgatgaatataaagaacacaaacataacctaaagatcaaacaatgttacttacctgtttattagcaatggtatcccacacttggacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19026402 |
acatgttcaaaatgatgaatataaagaacacaaacataacctaaagatcaaacaatgttacttacctgtttattagcaatggtatcccacacttggacaa |
19026501 |
T |
|
| Q |
301 |
gcgaactatccaaaccaatggctaatctacttccatcaggacaccagctaacacttgtgacgggaccatcttcctcatccacactaacaagttctgcagt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19026502 |
gcgaactatccaaaccaatggctaatctacttccatcaggacaccagctaacacttgtgacgggaccatcttcctcatccacactaacaagttctgcagt |
19026601 |
T |
|
| Q |
401 |
ggatttatttgaagcattccaaagataaacatcattttcaagggcaatactaagtacattgctgcaaccccaatctaataaattcaaacagaaatcgtcc |
500 |
Q |
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| T |
19026602 |
ggatttatttgaagcattccaaagataaacatcattttcaagggcaatactaaggacattgctgcaaccccaatctaataaattcaaacagaaatcgtcc |
19026701 |
T |
|
| Q |
501 |
aaaatatctggcgcgtccaattttctctctgaagtctgcaaaatc |
545 |
Q |
| |
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|||||||||||||| | |||||||||||| ||||||||||||||| |
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|
| T |
19026702 |
aaaatatctggcgcatgcaattttctctccgaagtctgcaaaatc |
19026746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 20728434 - 20727890
Alignment:
| Q |
1 |
tctttaatgtggttagctgcagacaccaaaatgaaatcacacaaacatgacaatattagataacaatttcaagtttgaattaatacaaagaaagaatggt |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20728434 |
tctttaatgtggttagctgcagataccaaaatgaaatcacacaaacatgagaatattagataacaatttcaagtttgaattaatacaaagaaagaatggt |
20728335 |
T |
|
| Q |
101 |
taaagggcaatatttgtttggtgttgaatcattaacttgattatgtaacagggatttacactcacttcttgcaatgatagaaactaaaaacgcattattc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20728334 |
taaagggcaatatttgtttggtgttgaatcattaacttgattatgtaacagggatttacactcacttcttgcaatgatagaaactaaaaatgcattattc |
20728235 |
T |
|
| Q |
201 |
acatgttcaaaatgatgaatataaagaacacaaacataacctaaagatcaaacaatgttacttacctgtttattagcaatggtatcccacacttggacaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20728234 |
acatgttcaaaatgatgaatataaagaacacaaacataacctaaagatcaaacaatgttacttacctgtttattagcaatggtatcccacacttggacaa |
20728135 |
T |
|
| Q |
301 |
gcgaactatccaaaccaatggctaatctacttccatcaggacaccagctaacacttgtgacgggaccatcttcctcatccacactaacaagttctgcagt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20728134 |
gcgaactatccaaaccaatggctaatctacttccatcaggacaccagctaacacttgtgacgggaccatcttcctcatccacactaacaagttctgcagt |
20728035 |
T |
|
| Q |
401 |
ggatttatttgaagcattccaaagataaacatcattttcaagggcaatactaagtacattgctgcaaccccaatctaataaattcaaacagaaatcgtcc |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20728034 |
ggatttatttgaagcattccaaagataaacatcattttcaagggcaatactaaggacattgctgcaaccccaatctaataaattcaaacagaaatcgtcc |
20727935 |
T |
|
| Q |
501 |
aaaatatctggcgcgtccaattttctctctgaagtctgcaaaatc |
545 |
Q |
| |
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|||||||||||||| | |||||||||||| ||||||||||||||| |
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|
| T |
20727934 |
aaaatatctggcgcatgcaattttctctccgaagtctgcaaaatc |
20727890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 344 - 543
Target Start/End: Original strand, 43527363 - 43527562
Alignment:
| Q |
344 |
ccagctaacacttgtgacgggaccatcttcctcatccacactaacaagttctgcagtggatttatttgaagcattccaaagataaacatcattttcaagg |
443 |
Q |
| |
|
||||||||| |||||||| |||||||| || ||||| ||| | ||||| |||| |||||| || ||||||||||||||||||||| |||||||||| |
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| T |
43527363 |
ccagctaacgcttgtgacaggaccatcatcatcatctacagtgacaagctctgaagtggaggaatctgaagcattccaaagataaacggtattttcaagg |
43527462 |
T |
|
| Q |
444 |
gcaatactaagtacattgctgcaaccccaatctaataaattcaaacagaaatcgtccaaaatatctggcgcgtccaattttctctctgaagtctgcaaaa |
543 |
Q |
| |
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|||||||| | |||||||||| |||||| |||| |||||||| | || || || || ||||| || |||||||| | ||||| ||||||||||||| |
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| T |
43527463 |
gcaatactgacaacattgctgctaccccagtctagcaaattcaagtaaaagtcatctaagatatcaggtgcgtccaaggtcctctcagaagtctgcaaaa |
43527562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 508
Target Start/End: Complemental strand, 16662431 - 16662379
Alignment:
| Q |
456 |
acattgctgcaaccccaatctaataaattcaaacagaaatcgtccaaaatatc |
508 |
Q |
| |
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||||| ||||||||||| |||||||||||||| |||||||||||| ||||| |
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| T |
16662431 |
acattactgcaaccccagtctaataaattcaagttgaaatcgtccaagatatc |
16662379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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