View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15981_high_4 (Length: 434)
Name: NF15981_high_4
Description: NF15981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15981_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 38559095 - 38559501
Alignment:
| Q |
16 |
atatatgaaatcattaaatttatcgctttttaatggaacctgaactaccaaattagaagacacaaccaacaccaaccataacaacagtaaaaaggaataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38559095 |
atatatgaaatcattaaatttatcgctttttaatggaacctgaactaccaaattagaagacacaaccaacaccaaccataacaacagtaaaaaggagtaa |
38559194 |
T |
|
| Q |
116 |
aaactgtaaatgaagacattagaattttatatgtggaaaactcctaataaaaattatgggacttagtccaaccaaaaacttccactatcaaaataaaggc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38559195 |
aaactgtaaatgaagacattagaattttatatgtggaaaactcctaataaaaattatgggacttagtccaaccaaaaacttccactatcaaaataaaggc |
38559294 |
T |
|
| Q |
216 |
tacaatcaatgtcttaatgtatctctagaactaacaaaacatcaaataattacaaattattgtgattttaacaacaagagagc-----aaacccacaaat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38559295 |
tacaatcaatgtcttaatgtatctctagaactaacaaaacatcaaataattacaaattattgtgattttaacaacaagagagcaaattaaacccacaaat |
38559394 |
T |
|
| Q |
311 |
gagtattccaaactgacacaaagaaaagataaaactttttagagaggggagacatttctcacttctagggttcttttgaactttgattgtcaatgaagac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38559395 |
aagtattccaaactgacacaaagaaaagataaaactttttagagaggggagacatttctcacttctagggttcttttgaactttgattgtcaacgaagac |
38559494 |
T |
|
| Q |
411 |
aatgtgt |
417 |
Q |
| |
|
||||||| |
|
|
| T |
38559495 |
aatgtgt |
38559501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 35905771 - 35905654
Alignment:
| Q |
187 |
ccaaaaacttccactatcaaaataaaggctacaatcaatgtcttaatgtatctctag-aactaacaaaacatcaaataattacaaattattgtgatttta |
285 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||| | |||||||| |||| | ||| ||||||||||| || || ||| |||||| || |
|
|
| T |
35905771 |
ccaaaaacttccactatcacaataatggttacaatcaatgtcttcctaaatctctagaaactga-aaatcatcaaataatcaccaactatggtgattcta |
35905673 |
T |
|
| Q |
286 |
acaacaagagagcaaaccc |
304 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
35905672 |
acaaccagagagcaaaccc |
35905654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 346
Target Start/End: Original strand, 2764594 - 2764813
Alignment:
| Q |
122 |
taaatgaagacattagaattttatatgtggaaaactcctaataaaaattatgggacttagtccaaccaaaaacttccactatcaaaataaaggctacaat |
221 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||||| ||||||| | ||||| ||||||| ||||||||||||||||||| ||||| || |||||| |
|
|
| T |
2764594 |
taaatgagaacactagaatttta-atgtggaaaactc---ataaaaaccacgggacctagtccagccaaaaacttccactatcataataatggttacaat |
2764689 |
T |
|
| Q |
222 |
caatgtcttaatgtatctcta-gaactaacaaaacatcaaataattacaaattattgtgattttaacaacaagagagcaaacccacaaatgagtattcca |
320 |
Q |
| |
|
||| ||||| | ||||||| |||| || | ||||||||||| || |||||| |||||| ||||||| ||||||||||| | |||| |||| ||| |
|
|
| T |
2764690 |
caacgtcttcctaaatctctaggaaccgac-agtcatcaaataatcaccaattatggtgattctaacaaccagagagcaaactc-taaataggtatacca |
2764787 |
T |
|
| Q |
321 |
aactgacacaaagaaaagataaaact |
346 |
Q |
| |
|
||| |||||||||| |||| |||||| |
|
|
| T |
2764788 |
aacagacacaaagagaagacaaaact |
2764813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 36966696 - 36966746
Alignment:
| Q |
76 |
cacaaccaacaccaaccataacaacagtaaaaaggaataaaaactgtaaat |
126 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||| |||||||||||||| |
|
|
| T |
36966696 |
cacaaccaacaacaacaataacaacaataaaaaggagtaaaaactgtaaat |
36966746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 188 - 346
Target Start/End: Original strand, 14261310 - 14261468
Alignment:
| Q |
188 |
caaaaacttccactatcaaaataaaggctacaatcaatgtcttaatgtatctctag-aactaacaaaacatcaaataattacaaattattgtgattttaa |
286 |
Q |
| |
|
|||||| ||| ||||||||||||| | ||||||||||||||| | |||||||| || | ||||||||||||| || || || ||| || ||||||| |
|
|
| T |
14261310 |
caaaaaattcaactatcaaaataatagttacaatcaatgtcttcttaaatctctaggaattgacaaaacatcaaaccatcaccaactatggtaattttaa |
14261409 |
T |
|
| Q |
287 |
caacaagagagcaaacccacaaatgagtattccaaactgacacaaagaaaagataaaact |
346 |
Q |
| |
|
||||||||||||||||||| |||| |||| |||||| ||||||||| |||| |||||| |
|
|
| T |
14261410 |
caacaagagagcaaaccca-aaatatgtatcccaaacaaacacaaagagaagacaaaact |
14261468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 290
Target Start/End: Complemental strand, 55280456 - 55280327
Alignment:
| Q |
161 |
aataaaaattatgggacttagtccaaccaaaaacttccactatcaaaataaaggctacaatcaatgtcttaatgtatctcta-gaactaacaaaacatca |
259 |
Q |
| |
|
|||||||| ||| ||| ||||||| |||||||||||||||| || ||||| || ||||||||||||||| || ||||||| ||||| || || ||||| |
|
|
| T |
55280456 |
aataaaaaccatgagacctagtccagccaaaaacttccactaccacaataatggttacaatcaatgtcttcataaatctctaggaactgac-aatcatca |
55280358 |
T |
|
| Q |
260 |
aataattacaaattattgtgattttaacaac |
290 |
Q |
| |
|
|||||| || || ||| |||||| ||||||| |
|
|
| T |
55280357 |
aataatcaccaactatggtgattctaacaac |
55280327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 16388104 - 16388140
Alignment:
| Q |
380 |
gttcttttgaactttgattgtcaatgaagacaatgtg |
416 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16388104 |
gttcttttgaactatgattgtcaatgaagacaatgtg |
16388140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University