View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15981_low_1 (Length: 617)
Name: NF15981_low_1
Description: NF15981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15981_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 15 - 545
Target Start/End: Complemental strand, 25813868 - 25813330
Alignment:
| Q |
15 |
actttgctccatcgtgaccttgttgtaaggccatttctagaaaatttctagcagaatcatagtttgaaatttgatagcaaatatctaggatacccattcg |
114 |
Q |
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| T |
25813868 |
actttgctccatcgtgaccttgttgtaaggccatttctagaaaatttctagtagaatcatagtttgaaatttgatagcaaatatctaggatacccattct |
25813769 |
T |
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| Q |
115 |
aaagcaatactctggatttctactagattctaacaattggtaaaaagaatccctatttccatcgactttgtacatgtttctggttagtgatatatccaat |
214 |
Q |
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| T |
25813768 |
aaagcaatactctggatttctactagattctaacaattggtaaagagaatccctatttccatcgactttgtacatgtttctggttagtgatgtatccaat |
25813669 |
T |
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| Q |
215 |
gcacaacaatgtgcaacttctgcattcagacaatgcttcttcaaaactttgcatgttttgctcaaattgagaagatctttcagtgaagatgtagcaacta |
314 |
Q |
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| T |
25813668 |
gcacaacaatgtgcaacttctgcattcagacaatgcttcttcaaaactttgcatgttttgctcaaattgagaagatctttcagtgaagatgtagcaacca |
25813569 |
T |
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| Q |
315 |
acgtaattataaagattaaaacatcatcagagagttctggaagcatattgttttggtggtttatttcaactacaaaaatatatttgattgaagtttgctt |
414 |
Q |
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| T |
25813568 |
acgtaattataaagattaaaacatcgtcagagagttctggaagcatattgttttggtggtttatttcacctac-aaaatatatttgagtgaagtttgctt |
25813470 |
T |
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| Q |
415 |
ctgcagggttatcttttttatgtgtgaaagttgttatatgatggatacattttatagttttat---------aattaaggacttgattgttgattatcaa |
505 |
Q |
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| T |
25813469 |
ctgcagggttatcttttttatgtgtgaaagttgttatatgatggatacattttatagttttataagtcagagaattaacgacttgattgttgattatcaa |
25813370 |
T |
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| Q |
506 |
tcaatacgtttggtatgaaaagttgtgtcaattgatattg |
545 |
Q |
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| T |
25813369 |
tcaatacgtttggtatgaaaaattgtgtcagttgatattg |
25813330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 543 - 604
Target Start/End: Complemental strand, 25813272 - 25813211
Alignment:
| Q |
543 |
ttgtaccctcatgagaaggtgtaattgtttctgttaaaaaataatttaatgtgaacctatgc |
604 |
Q |
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| T |
25813272 |
ttgtaccctcatgagaaggtgtaattgtttctgttaaaaaataatttaatgtgaacctatgc |
25813211 |
T |
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