View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15981_low_12 (Length: 249)
Name: NF15981_low_12
Description: NF15981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15981_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 44695258 - 44695489
Alignment:
| Q |
10 |
catcatcatggcaaaatggaaaaatgtaatgttgatatgatggatcgatcagccatgcatgctaacttgcaccacttactttactcttatgtattccttt |
109 |
Q |
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| T |
44695258 |
catcatcatggcaaaatggaaaaatgtaatgttgatatgatggatcgatcagccatgcatgctaacttgcaccacttactttactcttatgtattccttt |
44695357 |
T |
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| Q |
110 |
gatatttgaggcaaagtttcaccattcctgccgtacaaaacattaattaat--ttcctcaaagactccaaaaagatttgagatcaatgtatttaaaaggt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44695358 |
gatatttgaggcaaagtttcaccattcctgccgtacaaaacattaattaataattcctcaaagactccaaaaagatttgagatcaatgtatttaaaaggt |
44695457 |
T |
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| Q |
208 |
gaaatcaaaacaaagaaaaagtgtcctctgtg |
239 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
44695458 |
gaaatcaaaacaaagaaaaagtgtcctttgtg |
44695489 |
T |
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