View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15981_low_14 (Length: 234)
Name: NF15981_low_14
Description: NF15981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15981_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 43219844 - 43219640
Alignment:
| Q |
12 |
aagaagaaggaatctggatttgaaattgttgggtttcatgttgttccttgtagtgttaaacgtgatcccgaagttatgacgaagttacatatgtatgata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43219844 |
aagaagaaggaatctggatttgaaattgttgggtttcatgttgttccttgtagtgttaaacgggatcccgaagttatgacgaagttacatatgtatgata |
43219745 |
T |
|
| Q |
112 |
atatttcttcgataaactgtcccaatgagttggataagtatcaaccaataagagagcaagagaggatatcatttacatatgaagttgaatttgtgaaaag |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43219744 |
atatttcttcaataaactgtcccaatgagttggataagtatcaaccaataagagagcaagagaggatatcatttacatatgaagttgaatttgtgaaaag |
43219645 |
T |
|
| Q |
212 |
tgata |
216 |
Q |
| |
|
||||| |
|
|
| T |
43219644 |
tgata |
43219640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 37070926 - 37071143
Alignment:
| Q |
12 |
aagaagaaggaatctggatttgaaattgttgggtttcatgttgttccttgtagtgttaaacgtgatcccgaagttatgacgaagttacatatgtatgata |
111 |
Q |
| |
|
|||||||||| |||||| | |||||| ||||| ||||||||||| || |||||| ||||| ||| ||||||| ||| | ||| | |||||||||| |
|
|
| T |
37070926 |
aagaagaaggcatctgggtatgaaatagttggttttcatgttgtcccatgtagtattaaatatgaccccgaagccatggcaaagcacaaaatgtatgata |
37071025 |
T |
|
| Q |
112 |
atatttcttcgataaactgtcccaatgagttggataagtatcaaccaataagagagcaagagaggatatcatttacatatgaagttgaatttgtgaaaag |
211 |
Q |
| |
|
||| ||||| ||| ||| || |||||| | || || || || ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
37071026 |
gtatctcttctgtaagctgcccaaatgagctcgacaaataccaggtaataaaagagcaagagaggatatcattcacatatgatgttgaatttgtgaaaag |
37071125 |
T |
|
| Q |
212 |
tgatagatgatgtccatc |
229 |
Q |
| |
|
||||| | |||| ||||| |
|
|
| T |
37071126 |
tgatataagatggccatc |
37071143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University