View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15981_low_2 (Length: 563)
Name: NF15981_low_2
Description: NF15981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15981_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 40001611 - 40001332
Alignment:
| Q |
13 |
cagagaaggaaggtggtggtgtttccaagaaggaaaccaatcggcggattgggtcattgggattgtatagagagattttgttgtgttgggcatatgggac |
112 |
Q |
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| T |
40001611 |
cagagaaggaaggtggtggtgtttccaagaaggaaaccaatcggcggattgggtcattgggattgtatagagagattttgttgtgttgggcatatgggac |
40001512 |
T |
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| Q |
113 |
tccatgtgctcagtcccactcggatccctttgtttttgtcacattcacacactacatcacacatacactcccactccctttttattttattc-tacacca |
211 |
Q |
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| T |
40001511 |
tccatgtgctcagtcccactcggatccctttgtttttgtcacattcacacactacatcacacatacactcccactccctttttattttattcatacacca |
40001412 |
T |
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| Q |
212 |
ttcagttttcccaatacactattttaaaatagggttttgttaacgagtgtctttagtgttaagagcactcgttaaaggat |
291 |
Q |
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| T |
40001411 |
ttcagttttcccaatacactattttaaaataggattttgttaacgagtgtccttgatgttaagggcattcgttaaaggat |
40001332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 376 - 547
Target Start/End: Complemental strand, 40001191 - 40001019
Alignment:
| Q |
376 |
atgctaattgggttccgtaccaacatttcttgtacgaaattggatcaaattcttatactatcatactatactatgggacctttatt-atatactcttata |
474 |
Q |
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| T |
40001191 |
atgctaattgggatccgtaccaacatttcttgtacgaaattggatcaaattcttatactatcatactatactatgggacctttatttatatactcttata |
40001092 |
T |
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| Q |
475 |
attgaagaaagagcttatacatatatataattccaatatatcaaagatctaatcttattgcaaatgtgtggac |
547 |
Q |
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| T |
40001091 |
attgaagaaagagcttatacatatatataattccaatatatcaaagatctaatcttattgcaaatgtgtggac |
40001019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 40001241 - 40001208
Alignment:
| Q |
325 |
ttaacatttccctttaaaatagagtaataaatac |
358 |
Q |
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| T |
40001241 |
ttaacatttccctttaaaatagagtaataaatac |
40001208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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