View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15981_low_6 (Length: 413)

Name: NF15981_low_6
Description: NF15981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15981_low_6
NF15981_low_6
[»] chr4 (6 HSPs)
chr4 (16-269)||(33817410-33817663)
chr4 (28-304)||(40882211-40882485)
chr4 (89-240)||(33892984-33893139)
chr4 (23-123)||(52162955-52163062)
chr4 (242-337)||(29538519-29538613)
chr4 (16-122)||(33893154-33893270)
[»] chr7 (3 HSPs)
chr7 (23-340)||(45205455-45205767)
chr7 (32-234)||(8955618-8955819)
chr7 (230-340)||(8954161-8954271)
[»] chr2 (1 HSPs)
chr2 (16-326)||(5193474-5193782)
[»] chr1 (4 HSPs)
chr1 (30-319)||(18314937-18315226)
chr1 (90-240)||(30825589-30825744)
chr1 (243-337)||(25525634-25525727)
chr1 (29-122)||(30825483-30825572)
[»] chr8 (2 HSPs)
chr8 (104-234)||(6268086-6268220)
chr8 (16-122)||(6268250-6268363)
[»] chr3 (5 HSPs)
chr3 (89-216)||(9758968-9759099)
chr3 (170-328)||(53201482-53201630)
chr3 (16-122)||(9759114-9759227)
chr3 (113-186)||(53201643-53201715)
chr3 (242-301)||(46210144-46210202)
[»] chr5 (1 HSPs)
chr5 (242-337)||(20210758-20210851)
[»] scaffold0028 (1 HSPs)
scaffold0028 (283-340)||(71534-71591)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 33817663 - 33817410
Alignment:
Q  16 aaaaacttcacaaataagttctaattcatattccatctttaaaacataacatgttctaaacattgttggaaatcaaaatataacagacttacaaacacaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33817663 aaaaacttcacaaataagttctaattcatattccatctttaaaacatagcatgttctaaacattgttggaaatcaaaatataacagacttacaaacccaa 33817564  T
Q  116 gtaagttacatggtcaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatttatgcccatggagtcaaattgtcatagtct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33817563 gtaagttacatggtcaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatttatgtccatggagtcaaattgtcatagtct 33817464  T
Q  216 tgaaatccatattcatcatcttcatcggttgagatgggagaggagaacggcggt 269  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33817463 taaaatccatattcatcatcttcatcggttgagatgggagaggagaacggcggt 33817410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 28 - 304
Target Start/End: Complemental strand, 40882485 - 40882211
Alignment:
Q  28 aataagttctaattcatattccatctttaaaacataacatgttctaaacattgttggaaatcaaaatataacagacttacaaacacaagtaagttacatg 127  Q
    |||||||||||||| |  ||||||||||||||||||  |||||||||||||||||  ||||||||||||||  ||||||||||| |||||||||| |||     
T  40882485 aataagttctaattaagtttccatctttaaaacatagtatgttctaaacattgttaaaaatcaaaatataa--gacttacaaacccaagtaagttgcata 40882388  T
Q  128 gtcaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatttatgcccatggagtcaaattgtcatagtcttgaaatccatat 227  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||    
T  40882387 gtcaacaaaaaacggaaactcaaataagttataacaattcactaatcaataaactatttatgcccacatagtcaaattgtcatagtcttgatatccatat 40882288  T
Q  228 tcatcatcttcatcggttgagatgggagaggagaacggcggttgaaaatgacatttgggttggaagtatgtgttact 304  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||||| |||||||    
T  40882287 tcatcatcttcatcggttgagatgggataggagaacgccagttgaaaatgacatatgggttggaagtatatgttact 40882211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 33893139 - 33892984
Alignment:
Q  89 caaaatataacagacttacaaacacaagtaagtt----acatggtcaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactat 184  Q
    ||||| |||| ||||| ||||||  |||||||||    |||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||    
T  33893139 caaaaaataatagactaacaaacctaagtaagttgtaaacatagtcaacaaaacacagatacgcaaataagttataacaattcactaatcaataaactat 33893040  T
Q  185 ttatgcccatggagtcaaattgtcatagtcttgaaatccatattcatcatcttcat 240  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  33893039 ttatgtccatggagtcaaattatcatagtcttgatatccatattcatcatcttcat 33892984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 52163062 - 52162955
Alignment:
Q  23 tcacaaataagttctaattcatattccatctttaaaa-------cataacatgttctaaacattgttggaaatcaaaatataacagacttacaaacacaa 115  Q
    ||||||||||||||||||||| |||||||||||||||       ||||  |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  52163062 tcacaaataagttctaattcagattccatctttaaaagttaaaacatagtatgttctaaacattgttggaaatcaaaatataacagacttacaaacccaa 52162963  T
Q  116 gtaagtta 123  Q
    ||||||||    
T  52162962 gtaagtta 52162955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 29538519 - 29538613
Alignment:
Q  242 ggttgagatgggagaggagaacggcggttgaaaatgacatttgggttggaagtatgtgttactagggttgttgtctttatatatgccatgactttt 337  Q
    |||||||||| ||||||||||||||||||||||  | |||||||||||| ||||||||||||||||| | ||||||||||||||||| || |||||    
T  29538519 ggttgagatgagagaggagaacggcggttgaaatag-catttgggttgggagtatgtgttactaggggttttgtctttatatatgccttgcctttt 29538613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 33893270 - 33893154
Alignment:
Q  16 aaaaacttcacaaataagttctaattcatattccatcttt-------aaaacataac--atgttctaaacattgttggaaatcaaaatat-aacagactt 105  Q
    |||||| ||||||||||||||||||| | |||||||||||       ||||||||    ||||||||||||||||||||||||| |||||  ||||||||    
T  33893270 aaaaacctcacaaataagttctaatttagattccatcttttaaaattaaaacatatagtatgttctaaacattgttggaaatcataatatgtacagactt 33893171  T
Q  106 acaaacacaagtaagtt 122  Q
    ||||||  |||||||||    
T  33893170 acaaacctaagtaagtt 33893154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 23 - 340
Target Start/End: Original strand, 45205455 - 45205767
Alignment:
Q  23 tcacaaataagttctaattcatattccatctttaaaacataacatgttctaaacattgttggaaatcaaaatataacagacttacaaacacaagtaagtt 122  Q
    ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45205455 tcacaaataagttataattcagattccatctttaaaacataatatgttctaaacattgttggaaatcaaaatataacagacttacaaacccaagtaagtt 45205554  T
Q  123 acatggtcaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatttatgcccatggagtcaaattgtcatagtcttgaaatc 222  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||||||||||||||||||| |||    
T  45205555 acatagttaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatt----ccgatggagtcaaattgtcatagtcttgatatc 45205650  T
Q  223 catattcatcatcttcatcggttgagatgggagaggagaacggcggttgaaaatgacatttgggttggaagtatgtgttactagggttgttgtctttata 322  Q
    |||||||||||||||||| ||||||| | ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||    
T  45205651 catattcatcatcttcattggttgagct-ggagaggagaatggcggttgaaaatggcatttgggttgggagtatgtgttactagggtttttgtctttata 45205749  T
Q  323 tatgccatgactttttat 340  Q
    ||||||||| ||||||||    
T  45205750 tatgccatgcctttttat 45205767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 8955819 - 8955618
Alignment:
Q  32 agttctaattcatattccatctttaaaacataacatgttctaaacattgttggaaatcaaaatataacagacttacaaacacaagtaagttacatggtca 131  Q
    |||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||  |||||||||| |||||||||| ||| ||||    
T  8955819 agttctaattcagattccagctttagaacataatatgttctaaacattgttggaaatcaaagtataact-acttacaaacccaagtaagttgcatagtca 8955721  T
Q  132 acaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatttatgcccatggagtcaaattgtcatagtcttgaaatccatattcat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| || |||||    
T  8955720 acaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatttatacccatggagtcaaattgtcatggtcttgatatctattttcat 8955621  T
Q  232 cat 234  Q
    |||    
T  8955620 cat 8955618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 340
Target Start/End: Complemental strand, 8954271 - 8954161
Alignment:
Q  230 atcatcttcatcggttgagatgggagaggagaacggcggttgaaaatgacatttgggttggaagtatgtgttactagggttgttgtctttatatatgcca 329  Q
    |||||||||| ||||||||||| |||||||||||    |||||||||| ||||||| |||| ||||||||||||||| ||| |||||||| ||||||||     
T  8954271 atcatcttcagcggttgagatgagagaggagaacaattgttgaaaatggcatttggattgggagtatgtgttactagagtttttgtctttgtatatgccg 8954172  T
Q  330 tgactttttat 340  Q
    || ||||||||    
T  8954171 tgtctttttat 8954161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 5193782 - 5193474
Alignment:
Q  16 aaaaacttcacaaataagttctaattcatattccatctttaaaacataacatgttctaaacattgttggaaatcaaaatataacagacttacaaacacaa 115  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||| | |||||||||| |||    
T  5193782 aaaaactt-acaaataagttctaattcagattccatctttaaaacatagtatgttctaaacattgttggaaatcaaaatataataaacttacaaacccaa 5193684  T
Q  116 gtaagttacatggtcaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatttatgcccatggagtcaaattgtcatagtct 215  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5193683 gtaagttacataatcaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatttatgcccatggagtcaaattgtcatagtct 5193584  T
Q  216 tgaaatccatattcatcatcttcatcggttgagatgggagaggagaacggcggttgaaaatgacatttgggttggaagtatgtgttactagggttgttgt 315  Q
    ||| ||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||| |||||||||||| |||| ||||| ||| |||| ||||    
T  5193583 tgatatccatattcatcatcttcatcgattgagatggaagaggagaacgacagttgaaaatggcatttgggttgggagtacgtgttgcta-ggtttttgt 5193485  T
Q  316 ctttatatatg 326  Q
    |||||||||||    
T  5193484 ctttatatatg 5193474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 18315226 - 18314937
Alignment:
Q  30 taagttctaattcatattccatctttaaaacataacatgttctaaacattgttggaaatcaaaatataacagacttacaaacacaagtaagttacatggt 129  Q
    |||||| ||||| | |||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||    
T  18315226 taagttataatttagattccatctttaaaacatagtatgttctaaacattgttggaaatcaaaataaaacagacttagaaacccaagtaagttacatagt 18315127  T
Q  130 caacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatttatgcccatggagtcaaattgtcatagtcttgaaatccatattc 229  Q
    |||| ||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| || |||||||    
T  18315126 caactaaaaacaaaaactcacataagttataatagttcactaatcaataaactatttatgtccatgaagtcaaattgtcataatcttgatattcatattc 18315027  T
Q  230 atcatcttcatcggttgagatgggagaggagaacggcggttgaaaatgacatttgggttggaagtatgtgttactagggttgttgtcttt 319  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||  |||||||    
T  18315026 atcatcttcaccggttgagatggaagaggagagcggcggttgaaaatgacatttgggttaggagtatgtgttattagggtttgtgtcttt 18314937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 30825589 - 30825744
Alignment:
Q  90 aaaatataacagacttacaaacacaagtaagtt----acatggtcaacaaaa-aacagaaactcaaataagttataacaattcactaatcaataaactat 184  Q
    |||| |||| ||||||||||||  |||||||||    |||| |||||||||| |||||||||||||||||||||||||| ||||   ||||||||  |||    
T  30825589 aaaaaataatagacttacaaaccaaagtaagttctaaacatagtcaacaaaaaaacagaaactcaaataagttataacatttcagcgatcaataacttat 30825688  T
Q  185 ttatgcccatggagtcaaattgtcatagtcttgaaatccatattcatcatcttcat 240  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||    
T  30825689 ttatgctcatggtgtcaaattgtcatagtcttgatatccatattcatcttcttcat 30825744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 337
Target Start/End: Complemental strand, 25525727 - 25525634
Alignment:
Q  243 gttgagatgggagaggagaacggcggttgaaaatgacatttgggttggaagtatgtgttactagggttgttgtctttatatatgccatgactttt 337  Q
    ||||||||||||||||||||||||||||||||  |   |||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||    
T  25525727 gttgagatgggagaggagaacggcggttgaaatagtg-tttgggttgggagtatgtgttactagggtttttgtctttatatatgccttgcctttt 25525634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 30825483 - 30825572
Alignment:
Q  29 ataagttctaattcatattccatctttaaaacataacatgttctaaacattgttggaaatcaaaatataacagacttacaaacacaagtaagtt 122  Q
    |||||||| ||||||||||  ||||||||||||||| || | |||||  ||||| ||||||||||||||| |||||||||| | ||| ||||||    
T  30825483 ataagttccaattcatatt--atctttaaaacataatatttcctaaa--ttgttagaaatcaaaatataatagacttacaagcccaactaagtt 30825572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 6268220 - 6268086
Alignment:
Q  104 ttacaaacacaagtaagtt----acatggtcaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactatttatgcccatggagt 199  Q
    |||||||| ||||||||||    |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6268220 ttacaaacccaagtaagttctaaacatagtcaacaaaaatcagaaacacaaataagttataacaattcactaatcaataaactatttatgcccatgaagt 6268121  T
Q  200 caaattgtcatagtcttgaaatccatattcatcat 234  Q
    ||||||||||||||||||| |||| ||||||||||    
T  6268120 caaattgtcatagtcttgatatccgtattcatcat 6268086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 6268363 - 6268250
Alignment:
Q  16 aaaaacttcacaaataagttctaattcatattccatctttaaaa-------cataacatgttctaaacattgttggaaatcaaaatataacagacttaca 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||       ||||  |||||||||||||||||||||||||||||||||||||||||||    
T  6268363 aaaaacatcacaaataagttctaattcagattccatctttaaaaattaaaacatagtatgttctaaacattgttggaaatcaaaatataacagacttaca 6268264  T
Q  109 aacacaagtaagtt 122  Q
    ||| ||||||||||    
T  6268263 aactcaagtaagtt 6268250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 9759099 - 9758968
Alignment:
Q  89 caaaatataacagacttacaaacacaagtaagtt----acatggtcaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactat 184  Q
    ||||| |||| ||||||||||||| |||||||||    |||| || ||||||||||| |||| || |||||||||||||||||| |||||||||||||||    
T  9759099 caaaaaataatagacttacaaacataagtaagttctaaacatagtaaacaaaaaacaaaaacacatataagttataacaattcaataatcaataaactat 9759000  T
Q  185 ttatgcccatggagtcaaattgtcatagtctt 216  Q
    |||||||| ||||||||||||| |||||||||    
T  9758999 ttatgcccgtggagtcaaattgccatagtctt 9758968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 328
Target Start/End: Complemental strand, 53201630 - 53201482
Alignment:
Q  170 taatcaataaactatttatgcccatggagtcaaattgtcatagtcttgaaatccatattcatcatcttcatcggttgagatgggagaggagaacggcggt 269  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||||| ||  ||||||||          |||||||||| || ||||||||||||||    
T  53201630 taatcaataaactatttatgtccatgaagtcaaat-gtcatagtcttgatatttatattcatt---------ggttgagatgagacaggagaacggcggt 53201541  T
Q  270 tgaaaatgacatttgggttggaagtatgtgttactagggttgttgtctttatatatgcc 328  Q
    ||||||||||| |||||||||||||| |||||||||| ||| ||||| |||||||||||    
T  53201540 tgaaaatgacagttgggttggaagtacgtgttactagagtttttgtcattatatatgcc 53201482  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 9759227 - 9759114
Alignment:
Q  16 aaaaacttcacaaataagttctaattcatattccatctttaaaacataaca-------tgttctaaacattgttggaaatcaaaatataacagacttaca 108  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| ||| |       |||||||||| ||||||||||||||||||||||||||||| |    
T  9759227 aaaaacctcacaaataagttctaattcagattccatctttaaaacttaaaacaaagtatgttctaaacgttgttggaaatcaaaatataacagacttata 9759128  T
Q  109 aacacaagtaagtt 122  Q
    ||| ||||||||||    
T  9759127 aactcaagtaagtt 9759114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 53201715 - 53201643
Alignment:
Q  113 caagtaagttacatggtcaacaaaaaacagaaactcaaataagttataacaattcactaatcaataaactattt 186  Q
    |||||||||| ||| || || ||||||||| |||||||||||||||||| ||||| ||||||||||||||||||    
T  53201715 caagtaagttgcatagtaaa-aaaaaacagtaactcaaataagttataataattcgctaatcaataaactattt 53201643  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 46210202 - 46210144
Alignment:
Q  242 ggttgagatgggagaggagaacggcggttgaaaatgacatttgggttggaagtatgtgtt 301  Q
    |||||||||||||||| |||||||| |||| ||||  |||||||||||| ||||||||||    
T  46210202 ggttgagatgggagagtagaacggcagttg-aaatagcatttgggttgggagtatgtgtt 46210144  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 20210851 - 20210758
Alignment:
Q  242 ggttgagatgggagaggagaacggcggttgaaaatgacatttgggttggaagtatgtgttactagggttgttgtctttatatatgccatgactttt 337  Q
    ||||||||||||||||||||| |||||||||||  | |||| ||||||| |||||||||||||||| || || |||||||||||||| || |||||    
T  20210851 ggttgagatgggagaggagaatggcggttgaaatag-catt-gggttgggagtatgtgttactaggctttttatctttatatatgccttgcctttt 20210758  T

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Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 71534 - 71591
Alignment:
Q  283 tgggttggaagtatgtgttactagggttgttgtctttatatatgccatgactttttat 340  Q
    |||||||| ||||||||||| || |||| ||||||||||||||| | || ||||||||    
T  71534 tgggttgggagtatgtgttagtacggtttttgtctttatatatgtcgtgcctttttat 71591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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