View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15981_low_7 (Length: 345)
Name: NF15981_low_7
Description: NF15981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15981_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 4 - 337
Target Start/End: Original strand, 49215401 - 49215734
Alignment:
| Q |
4 |
ctcgttgaaagtccagccaaatcatgctccatgtattgaaagacaagatacaaactacatgacatcctagaagtcactaaaccttctagtttgataacat |
103 |
Q |
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| T |
49215401 |
ctcgttgaaagtccagccaaatcatgctccatgtattgaaagacaagatacaaactacatgacatcctagaagtcactaaaccttctagtttgataacat |
49215500 |
T |
|
| Q |
104 |
tgggatgatccagacgacgcagaatcagaatttctctggccatgaatttcacactctctggttctaaattgtcaaaacgaaccttctttaatgcaacaat |
203 |
Q |
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| T |
49215501 |
tgggatgatcaagacgacgcagaatcagaatttctctggccatgaatttcacactctctggttctaaattgtcaaaacgaaccttctttaatgcaacaat |
49215600 |
T |
|
| Q |
204 |
tttcccagttatagtatccttagctttgtaaacattgctatatgtaccttgtccaatctgattgaaaaatagtacagaagtaagagactcaatctcaatt |
303 |
Q |
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| T |
49215601 |
tttcccagttatagtatccttagctttgtaaacattgctatatgtaccttgtccaatctgattgaaaaatagtacagaagtaagagactcaatctcaatt |
49215700 |
T |
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| Q |
304 |
ttaagtttacaacaaaacaacagaataatctacc |
337 |
Q |
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| T |
49215701 |
ttaagtttacaaccaaacaacaaaagaatctacc |
49215734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 45252047 - 45251974
Alignment:
| Q |
124 |
agaatcagaatttctctggccatgaatttcacactctctggttctaaattgtcaaaacgaaccttctttaatgc |
197 |
Q |
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| T |
45252047 |
agaatcataatttcccttgccataaacctcacactttctggctcaaaattgtcaaatctaaccttctttaatgc |
45251974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 6701046 - 6700794
Alignment:
| Q |
12 |
aagtccagccaaatcatgctccatgtattgaaagacaagatacaaactacatgacatcctagaagtcactaaaccttctagtttgataacattgggatga |
111 |
Q |
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||||||||||| |||||| ||||||||| ||| |||||||| ||||| |||||||| ||||| |||||||| ||||||||||||| ||||||||||||| |
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| T |
6701046 |
aagtccagccagatcatgtgccatgtattcaaacacaagatataaactgcatgacattctagatgtcactaagccttctagtttgacaacattgggatga |
6700947 |
T |
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| Q |
112 |
tccagacgacgcagaatcagaatttctctggccatgaatttcacactctctggttctaaattgtcaaaacgaaccttctttaatgcaacaattttcccag |
211 |
Q |
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|||| |||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||| || |||| ||||| | |
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| T |
6700946 |
tccaaacgacgcagaatcagaatctctctggccatgaacttcacactctcaggctctaaattgtcgaaacggaccttctttaaggctacaaccttccctg |
6700847 |
T |
|
| Q |
212 |
ttatagtatccttagctttgtaaacattgctatatgtaccttgtccaatctga |
264 |
Q |
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| T |
6700846 |
ttaaagtatccctagctttgtaaacattgctgtatgtaccttgcccaatctga |
6700794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 36469137 - 36468895
Alignment:
| Q |
12 |
aagtccagccaaatcatgctccatgtattgaaagacaagatacaaactacatgacatcctagaagtcactaaaccttctagtttgataacattgggatga |
111 |
Q |
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||||||||| |||||||| ||||||||| ||| || ||||||||||| |||||||| ||||| || ||||||||||||| || ||||||||||||||| |
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| T |
36469137 |
aagtccagctaaatcatgtaccatgtattcaaacaccagatacaaactccatgacattctagatgtaactaaaccttctaactttataacattgggatga |
36469038 |
T |
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| Q |
112 |
tccagacgacgcagaatcagaatttctctggccatgaatttcacactctctggttctaaattgtcaaaacgaaccttctttaatgcaacaattttcccag |
211 |
Q |
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|||| | ||||| || || || ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||| || || | |
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| T |
36469037 |
tccaatcttcgcagtataaggatctctctagccatgaattttacactctcgggttccaaattgtcaaatcgaaccttcttcaatgcaacaatcttacccg |
36468938 |
T |
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| Q |
212 |
ttatagtatccttagctttgtaaacattgctatatgtaccttg |
254 |
Q |
| |
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|||| ||| ||||||||||| ||||| |||||||| ||||| |
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| T |
36468937 |
ttattaaatctttagctttgtacacattactatatgttccttg |
36468895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 47180389 - 47180639
Alignment:
| Q |
12 |
aagtccagccaaatcatgctccatgtattgaaagacaagatacaaactacatgacatcctagaagtcactaaaccttctagtttgataacattgggatga |
111 |
Q |
| |
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|||||| || ||||||||||||||||| | ||| || | |||||||||||| ||||||||||| || |||||||||| | || |||||||| |||||| |
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| T |
47180389 |
aagtccggctaaatcatgctccatgtaatcaaacaccaaatacaaactacaagacatcctagatgtaactaaaccttgcaacttaataacatttggatga |
47180488 |
T |
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| Q |
112 |
tccagacgacgcagaatcagaatttctctggccatgaatttcacactctctggttctaaattgtcaaaacgaaccttctttaatgcaacaattttcccag |
211 |
Q |
| |
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|||| | |||||||| | ||| ||||| ||||||||||| | ||||| ||||| ||||||||||| ||||||||||| | ||||||| ||| || | |
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| T |
47180489 |
tccaaccttcgcagaataataatctctctagccatgaatttaatgctctcgggttccaaattgtcaaatcgaaccttcttgagagcaacaactttaccgg |
47180588 |
T |
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| Q |
212 |
ttatagtatccttagctttgtaaacattgctatatgtaccttgtccaatct |
262 |
Q |
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| || | || |||||||||| ||||| ||||| |||||||| ||||||| |
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| T |
47180589 |
tcatggagtctatagctttgtacacattactataagtaccttgcccaatct |
47180639 |
T |
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