View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_high_15 (Length: 402)
Name: NF15982_high_15
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 224082 - 224471
Alignment:
| Q |
1 |
tgtgtttaacttatgcagcaacaatgttttagtgtttatgtaaatgcgcacgcattcaaaatttagcatttaagaaactaattgatgcaattattttctg |
100 |
Q |
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| T |
224082 |
tgtgtttaacttatgcagcaacaatgttttagtgtttatgtaaatgcgcacgcattcaaaatttagcatttaagaaactaattgatgcaattattttctg |
224181 |
T |
|
| Q |
101 |
catgtgttatcaagaattagttaaccttgatgacaaagacactgaaatagtttcggatcatggaccttgacaaggatttttaggatgttttgttttatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
224182 |
catgtgttatcaagaattagttaaccttgatgacaaagacactgaaatagtttcggatcatggaccttgacaaggatttttaggatgttttgttttatgg |
224281 |
T |
|
| Q |
201 |
agatagagatatggctttagatatgtatgtagtactaatgcagcagtgtttttgcttac-----aaggaatttgtgcatggagtgaactcagtgaagtga |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
224282 |
agatagagatatggctttagatatgtatgtagtactaatgcagcagtgtttttgcttacaaggaaaggaatttgtgcatggagtgaactcagtgaagtga |
224381 |
T |
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| Q |
296 |
tagtgctcctcagcaatacttgttcaaatcatctgattattttgtactattgacatcatgttaataggggattttgttcattgtataaat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
224382 |
tagtgctcctcagcaatacttgttcaaatcatctgattattttgtactattgacatcatgttaataggggattttgttcattgtataaat |
224471 |
T |
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