View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_high_2 (Length: 696)
Name: NF15982_high_2
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 16 - 685
Target Start/End: Complemental strand, 13738463 - 13737793
Alignment:
| Q |
16 |
ctaaatattcaatgtcttgcattttagttgttaatgaaatacttgttaattatgagatatttctatactacgttcatttcataactatgttaatgaaata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13738463 |
ctaaatattcaatgtcttgcattttagttgttaatgaaatacttgttaattatgagatatttctatactacgttcatttcataactatgttaatgaaata |
13738364 |
T |
|
| Q |
116 |
ttggctaatggtatattttttattattatagagaaggccgattgatgtacttttaatggttaacaaaatatataataaataagtggttggttaatcacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13738363 |
ttggctaatggtatattttttattattatagagaaggccgattgatgtacttttaatggttaacaaaacatataataaataagtggttggttaatcacat |
13738264 |
T |
|
| Q |
216 |
tcattttaatgcttaatgaagtactaacgaagtactttannnnnnnnnnnnnnnncggtaagtactctatttagtcaatgacataaaattgcatgctgtt |
315 |
Q |
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| T |
13738263 |
tcattttaatgcttaatgaagtactaacgaagtactttatttgttttttgtttttgggtaagtactctatttagtcaatgacataaaattgcatgctgtt |
13738164 |
T |
|
| Q |
316 |
gttgttgttttgttttaaaataaaatataattcattaaggtcaattaacaagaattaggggtgctcgtggttggtttaggca-aaaaactgaactaagta |
414 |
Q |
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| T |
13738163 |
gttgttgttttgttttaaaataaaatataattcattaaggtcaattaacaagaattaggggtgctcatggttggtttaggcggaaaaactgaactaaata |
13738064 |
T |
|
| Q |
415 |
gttttcacagttcataaaaacgatccaaattgctttttctaagaagctaaaatagattaattaatagctttgtttcttctttttggaacgtcatctggtc |
514 |
Q |
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| T |
13738063 |
gttttcacagttcataaaaacgatccaaattgctttttctaagaagctaaaatagattaattaatagctttgtttcttctttctggaacgtcatctggtc |
13737964 |
T |
|
| Q |
515 |
tcaaagatgcatttccataagagtatactagttggtgttaacatccatgattcttggttaactaaggctgcctctgttctaaatggtaaaatgggtagac |
614 |
Q |
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| T |
13737963 |
tcaaagatgcacttccataagagtatactagttggtgttaacatccaagattcttgattaactaaggctgcctctgttctaaatggtaaaatgggtagac |
13737864 |
T |
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| Q |
615 |
tacttttcctttacttggggacacatattgggggtaactctcgtaagttgaacttttttgagacctttgct |
685 |
Q |
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| T |
13737863 |
tacttttcctttacttggggacacatattgggggtgactctcgtaagttgaacttttttgagacctttgct |
13737793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 635
Target Start/End: Original strand, 23479543 - 23479626
Alignment:
| Q |
552 |
ttaacatccatgattcttggttaactaaggctgcctctgttctaaatggtaaaatgggtagactacttttcctttacttgggga |
635 |
Q |
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|||| ||||||||||||||||| ||| |||| |||||||||| | ||||||||||| | ||| ||||||||||||||||| |
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| T |
23479543 |
ttaatatccatgattcttggttgacttaggcatcctctgttcttctttgtaaaatgggtcgtttacctttcctttacttgggga |
23479626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 627
Target Start/End: Original strand, 48639141 - 48639261
Alignment:
| Q |
506 |
catctggtctcaaagatgcatttccataagagtatactagttggtgttaacatccatgattcttggttaactaaggctgcctctgttctaaatggtaaaa |
605 |
Q |
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||||||||||||||| || | ||||| || || || ||||||||||||| || |||||||||||||| || |||| ||||||||||| || ||||| |
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| T |
48639141 |
catctggtctcaaag-tgaacttccacaaaagcatgttagttggtgttaatattcatgattcttggttggctgaggcagcctctgttcttcattgtaaat |
48639239 |
T |
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| Q |
606 |
tgggtagactacttttccttta |
627 |
Q |
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| T |
48639240 |
tgggcagagttcctttccttta |
48639261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 506 - 594
Target Start/End: Complemental strand, 26370623 - 26370536
Alignment:
| Q |
506 |
catctggtctcaaagatgcatttccataagagtatactagttggtgttaacatccatgattcttggttaactaaggctgcctctgttct |
594 |
Q |
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||||||||||||| | || | ||||| || ||||| ||||||||||||| || |||||||||||||| || |||| ||||||||||| |
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| T |
26370623 |
catctggtctcaagg-tgaacttccacaaaagtatgttagttggtgttaatattcatgattcttggttggctgaggcagcctctgttct |
26370536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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