View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15982_high_3 (Length: 687)
Name: NF15982_high_3
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 682
Target Start/End: Complemental strand, 38443440 - 38442780
Alignment:
| Q |
19 |
catactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
118 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38443440 |
catactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatcaaaatcttcaccaaggagttgatacttgaagcaaacattgga |
38443341 |
T |
|
| Q |
119 |
aaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacga |
218 |
Q |
| |
|
|| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
38443340 |
aaccatgaatgaggaaagctttgccatgaggtcggagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgacga |
38443241 |
T |
|
| Q |
219 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38443240 |
tgatcatgaagagcagtaagcctaggttggatttctccaccataagtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtattga |
38443141 |
T |
|
| Q |
319 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgttgggaccttctgnnnnnnnaactatgtgaattgtgagatattcaaatttatatgtattttc |
418 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38443140 |
gaatgaaaagagggttcgagaaaagacggatgaaactgttgggaccttctctttttttaactatgtgaattgtgagatattcaaatttatatgta-tttc |
38443042 |
T |
|
| Q |
419 |
attaactgaatttccaaaatattaggggggaatgaaagagagttttaaataaataaactatggcaaatatagtttgactaaccgaattttccaaatacta |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| |
|
|
| T |
38443041 |
attaactgaatttccaaaatattaggggggaatgaaagagagttttaaataaataaactatggc-aatatagttggacttaccgaattttccaaatacta |
38442943 |
T |
|
| Q |
519 |
tgggaatgtgaaaattcttatccatgttgtttgttaacttttcacgtgaannnnnnnngataagccatgtaacttatcccatgccatttatataaggcat |
618 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
38442942 |
tgggaatgtgaaaattcttat-catgttgtttgttaacttttcacgtgaattttttttgataagccatttaacttatcccatcccatttatataaggcat |
38442844 |
T |
|
| Q |
619 |
ataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaaccctttgctact |
682 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38442843 |
ataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaaccctttgatact |
38442780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 38182745 - 38183083
Alignment:
| Q |
19 |
catactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
118 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38182745 |
catactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatacttgaagcaaacatcgga |
38182844 |
T |
|
| Q |
119 |
aaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
38182845 |
aaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgacga |
38182944 |
T |
|
| Q |
219 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38182945 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactga |
38183044 |
T |
|
| Q |
319 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgt |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183045 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38183083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 38188386 - 38188048
Alignment:
| Q |
19 |
catactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
118 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38188386 |
catactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatacttgaagcaaacatcgga |
38188287 |
T |
|
| Q |
119 |
aaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
38188286 |
aaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgacga |
38188187 |
T |
|
| Q |
219 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188186 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactga |
38188087 |
T |
|
| Q |
319 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgt |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188086 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38188048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 38209971 - 38210309
Alignment:
| Q |
19 |
catactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
118 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38209971 |
catactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatacttgaagcaaacatcgga |
38210070 |
T |
|
| Q |
119 |
aaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
38210071 |
aaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgacga |
38210170 |
T |
|
| Q |
219 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38210171 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactga |
38210270 |
T |
|
| Q |
319 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgt |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38210271 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38210309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 38169855 - 38169517
Alignment:
| Q |
19 |
catactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
118 |
Q |
| |
|
||||||| ||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38169855 |
catactcgaacataatatgattgagatcttcttcgttataaattgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
38169756 |
T |
|
| Q |
119 |
aaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| || |
|
|
| T |
38169755 |
aaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgaaga |
38169656 |
T |
|
| Q |
219 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38169655 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtactga |
38169556 |
T |
|
| Q |
319 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgt |
357 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38169555 |
gagtgtaaagagggttcgagaaaagacgggtgaaactgt |
38169517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 38215611 - 38215274
Alignment:
| Q |
19 |
catactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
118 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38215611 |
catactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaaggagttgatacttgaaacaaacatcgga |
38215512 |
T |
|
| Q |
119 |
aaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
38215511 |
aaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgacga |
38215412 |
T |
|
| Q |
219 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215411 |
tgatcatgaagagcagtaagcctaggttgga-ttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactga |
38215313 |
T |
|
| Q |
319 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgt |
357 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38215312 |
gagtgaaaagagggttcaagaaaagacgggtgaaactgt |
38215274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 38185644 - 38185300
Alignment:
| Q |
19 |
catactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
118 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38185644 |
catactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatacttgaagcaaacatcgga |
38185545 |
T |
|
| Q |
119 |
aaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
38185544 |
aaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacga |
38185445 |
T |
|
| Q |
219 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactga |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38185444 |
tgatcatgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtactga |
38185345 |
T |
|
| Q |
319 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
363 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||| |||||||| |
|
|
| T |
38185344 |
gagtgaaaataggattcgagaaaagacgtctgaaacagttgggac |
38185300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 38212713 - 38213057
Alignment:
| Q |
19 |
catactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
118 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38212713 |
catactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatacttgaagcaaacatcgga |
38212812 |
T |
|
| Q |
119 |
aaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
38212813 |
aaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacga |
38212912 |
T |
|
| Q |
219 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactga |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38212913 |
tgatcatgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtactga |
38213012 |
T |
|
| Q |
319 |
gagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
363 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||| |||||||| |
|
|
| T |
38213013 |
gagtgaaaataggattcgagaaaagacgtctgaaacagttgggac |
38213057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 75 - 363
Target Start/End: Complemental strand, 38183479 - 38183191
Alignment:
| Q |
75 |
tcgaaatcttcaccaaggagttgatacttgaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcga |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
38183479 |
tcgaaatcttcaccaaggagttgatacttgaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcaaagaagttgatattacgatcga |
38183380 |
T |
|
| Q |
175 |
cggtgatgattttattgtctccgtcgatgtaggaataccgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaa |
274 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183379 |
cgatgatgattttattgtctccaccgatgtaggaataacgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgag |
38183280 |
T |
|
| Q |
275 |
cttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
38183279 |
cttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgagaaaagacgtctgaaacagttgggac |
38183191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 75 - 363
Target Start/End: Original strand, 38214878 - 38215166
Alignment:
| Q |
75 |
tcgaaatcttcaccaaggagttgatacttgaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcga |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
38214878 |
tcgaaatcttcaccaaggagttgatacttgaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcaaagaagttgatattacgatcga |
38214977 |
T |
|
| Q |
175 |
cggtgatgattttattgtctccgtcgatgtaggaataccgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaa |
274 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214978 |
cgatgatgattttattgtctccaccgatgtaggaataacgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgag |
38215077 |
T |
|
| Q |
275 |
cttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
38215078 |
cttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgagaaaagacgtctgaaacagttgggac |
38215166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 38453055 - 38453380
Alignment:
| Q |
19 |
catactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
118 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38453055 |
catactctaacatcatatgattgagatcttcttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatcgga |
38453154 |
T |
|
| Q |
119 |
aaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacga |
218 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
38453155 |
aaacatgaatatggaaagctttgccatgaggtcggagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacgacga |
38453254 |
T |
|
| Q |
219 |
tgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactg- |
317 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
38453255 |
tgatcatgaagagaagtaagccttggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaa--gttttgagagggtaccga |
38453352 |
T |
|
| Q |
318 |
---agagtgaaaagagggttcgagaaaa |
342 |
Q |
| |
|
||| |||||||||| |||||||||| |
|
|
| T |
38453353 |
ccaagattgaaaagaggattcgagaaaa |
38453380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 140 - 357
Target Start/End: Original strand, 38197370 - 38197587
Alignment:
| Q |
140 |
tgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacgatgatcatgaagagcagtaagc |
239 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
38197370 |
tgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgaagatgatcatgaagagcagtaagc |
38197469 |
T |
|
| Q |
240 |
ctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgaga |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
38197470 |
ctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtactgagagtgtaaagagggttcgaga |
38197569 |
T |
|
| Q |
340 |
aaagacgggtgaaactgt |
357 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38197570 |
aaagacgggtgaaactgt |
38197587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 38155918 - 38155845
Alignment:
| Q |
27 |
aacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgata |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38155918 |
aacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata |
38155845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 38452129 - 38452167
Alignment:
| Q |
215 |
acgatgatcatgaagagcagtaagcctaggttggatttt |
253 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
38452129 |
acgatgaacatgaagagcagtaagtctaggttggatttt |
38452167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 28341069 - 28340981
Alignment:
| Q |
80 |
atcttcaccaaggagttgatacttgaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattac |
168 |
Q |
| |
|
|||||||||| |||| || |||||||||||| |||| | ||||||| | ||||||||| | | |||||||||||| |||||||||| |
|
|
| T |
28341069 |
atcttcaccagggagctggtacttgaagcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattac |
28340981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 28399628 - 28399676
Alignment:
| Q |
63 |
gggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaa |
111 |
Q |
| |
|
|||||||||| ||||| ||||| |||| | ||||||||||||||||||| |
|
|
| T |
28399628 |
gggatcaaagtatcgagatcttgaccaggaagttgatacttgaagcaaa |
28399676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 608 - 672
Target Start/End: Original strand, 53352659 - 53352723
Alignment:
| Q |
608 |
atataaggcatataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaacc |
672 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || |||||| |||||||||||||| |||||| |
|
|
| T |
53352659 |
atataaggcatataacttatcccaattatattaccatgtatatcgcacaaacctaccttcaaacc |
53352723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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