View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_high_31 (Length: 324)
Name: NF15982_high_31
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 44 - 313
Target Start/End: Original strand, 33251367 - 33251636
Alignment:
| Q |
44 |
tgtttcaatgttacaacttaccatacccgctggatacatactaatcaacgtcacaaaggagatgaaggacctaattttcaatagaaactgaatgtagtac |
143 |
Q |
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| T |
33251367 |
tgtttcaatgttacaacttaccatacccgctggatacataccaatcaacgtcacaaaggagatgaaggacctaattttcaatagaaactgaatgtagtac |
33251466 |
T |
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| Q |
144 |
gtaacccctggtgtcttatataagcatataaatgtcgttgatataggttattctttgatatgcggattataggcttgattcttggatgaatttaattatt |
243 |
Q |
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| T |
33251467 |
gtaacccctggtgtcttatataagcatataaatgtcgttgatagaggttattctttgatatgcggattataggcttgattcttggatgaatttaattatt |
33251566 |
T |
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| Q |
244 |
tatttattgttttgaacaaatggaaatcaatgatttaaaaccaagttgtttggactccagtgacaatgag |
313 |
Q |
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| T |
33251567 |
tatttattgttttgaacaaatggaaatcaatgatttaaaaccaagttgtttgggctccggtggcaatgag |
33251636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 3654076 - 3654044
Alignment:
| Q |
281 |
aaaccaagttgtttggactccagtgacaatgag |
313 |
Q |
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| T |
3654076 |
aaaccaagttgtttgggctccagtgacaatgag |
3654044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 937650 - 937618
Alignment:
| Q |
281 |
aaaccaagttgtttggactccagtgacaatgag |
313 |
Q |
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| T |
937650 |
aaaccaagttgtttgggctccagtgacaatgag |
937618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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