View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_high_36 (Length: 289)
Name: NF15982_high_36
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 5328616 - 5328876
Alignment:
| Q |
13 |
agatgaatgcttaagatatatggcacaattggaccttttttcaagcagaattaagaccaaatatcattagttaatgaaattaaagtaaaaaatttccaac |
112 |
Q |
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| T |
5328616 |
agatgaatgcttaagatatatggcacaattggaccttttttcaagcagaattaagaccaaatatcattagttaatgaaattaaagtaaaaaatttccaac |
5328715 |
T |
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| Q |
113 |
tccattgctacctttttataaatattgtgtgttgcaggtttatcagtatgattcctttgttccagtacttgacaaagcagttgattcttcgtggaagaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5328716 |
tccattgctacctttttataaatattgtgtgttgcaggtttatcagtatgattcctttgttcaagtacttgacaaagcagttgattcttcgtggaagaaa |
5328815 |
T |
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| Q |
213 |
acaatccaaaacgacaaatacgcgctttcgaaaggtagacgtttgaataaacagcttaatt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5328816 |
acaatccaaaacgacaaatacgcgctttcgaaaggtagacgtttgaataaacagcttaatt |
5328876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 54774770 - 54775030
Alignment:
| Q |
13 |
agatgaatgcttaagatatatggcacaattggaccttttttcaagcagaattaagaccaaatatcattagttaatgaaattaaagtaaaaaatttccaac |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54774770 |
agatgactgcttaagatatatggcacaattggaccttttttcaagcagaattaagaccaaatatcattagttaatgaaattaaagtaaaaaatttccaac |
54774869 |
T |
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| Q |
113 |
tccattgctacctttttataaatattgtgtgttgcaggtttatcagtatgattcctttgttccagtacttgacaaagcagttgattcttcgtggaagaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54774870 |
tccattgctacctttttataaatattgtgtgttgcaggtttatcagtatgattcctttgttccagtacttgacaaagcagttgattcttcgtggaagaaa |
54774969 |
T |
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| Q |
213 |
acaatccaaaacgacaaatacgcgctttcgaaaggtagacgtttgaataaacagcttaatt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54774970 |
acaatccaaaacgacaaatacgcgctttcgaaaggtagacgtttgaataaacagcttaatt |
54775030 |
T |
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