View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15982_high_44 (Length: 269)
Name: NF15982_high_44
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_high_44 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0442 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 9289915 - 9289663
Alignment:
| Q |
17 |
aagcataacttggagatacatactctaactgttgcacctagaggattaaccnnnnnnncacattcatgatggtaatgtaattcgttgccgaggaattcaa |
116 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
9289915 |
aagcataacttgcagatacaaactctaactgttgcacctagaggattaaccaaaaaaacatattcatgatggtaatgtaattcgttgccgaggaattcaa |
9289816 |
T |
|
| Q |
117 |
atgcatataaggnnnnnnnntactataaaataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcatc |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9289815 |
atgcatataagaaaaaaaatcactataaaataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcatc |
9289716 |
T |
|
| Q |
217 |
cttttggctgttcttgtacaatccgccatcaagtaagattgtgcaaccagcaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9289715 |
cttttggctgttcttgtacaatccgccatcaagtaagattgtgcaaccagcaa |
9289663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 8211671 - 8211423
Alignment:
| Q |
17 |
aagcataacttggagatacatactctaactgttgcacctagaggattaaccnnnnnnncacattcatgatggtaatgtaattcgttgccgaggaattcaa |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8211671 |
aagcataacttgcagatacatactctaactgttgcacctagaggattaaccaaaaaaacacattcatgatggtaatgtaattcgttgtcgaggaattcaa |
8211572 |
T |
|
| Q |
117 |
atgcatataaggnnnnnnnnt-actataaaataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcat |
215 |
Q |
| |
|
|||||||||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8211571 |
atgcatataaggaaaaaaaaacactatacaata-----tctacgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcat |
8211477 |
T |
|
| Q |
216 |
ccttttggctgttcttgtacaatccgccatcaagtaagattgtgcaaccagcaa |
269 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8211476 |
ccttttggttgttcttgtacaatccgccatcaagtaagattgtgcaaccagcaa |
8211423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 51424102 - 51423850
Alignment:
| Q |
17 |
aagcataacttggagatacatactctaactgttgcacctagaggattaaccnnnnnnncacattcatgatggtaatgtaattcgttgccgaggaattcaa |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51424102 |
aagcataacttgcagatacatactctaactgttgcacctagaggattaaccaaaaaaacacattcatgatggtaatgtaattcgttgccgaggaattcaa |
51424003 |
T |
|
| Q |
117 |
atgcatataaggnnnnnnnntactataaaataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcatc |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51424002 |
atgcatataaggaaaaaaaacactataaaataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcatc |
51423903 |
T |
|
| Q |
217 |
cttttggctgttcttgtacaatccgccatcaagtaagattgtgcaaccagcaa |
269 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
51423902 |
cttttggttgttcttgtacaatccgccatcaagtgaggttgtgcaaccagcaa |
51423850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 11685581 - 11685451
Alignment:
| Q |
139 |
ctataaaataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcatccttttggctgttcttgtacaat |
238 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11685581 |
ctataaaataaaacatccataaagccacttctacaatatatgcgtccacggtagtcttagttcttaagtaattgcatccttttggctgttcttgtacaat |
11685482 |
T |
|
| Q |
239 |
ccgccatcaagtaagattgtgcaaccagcaa |
269 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
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|
| T |
11685481 |
ccgccatcaagtaagattgtgtaaccagcaa |
11685451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 11686073 - 11685962
Alignment:
| Q |
17 |
aagcataacttggagatacatactctaactgttgcacctagaggattaaccnnnnnnncacattcatgatggtaatgtaattcgttgccgaggaattcaa |
116 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11686073 |
aagcataacttgcatatacatactctaactcttgcacctagaggattaaccaaaaaaacacattcatgatggtaatgtaattcgttgccgaggaattcaa |
11685974 |
T |
|
| Q |
117 |
atgcatataagg |
128 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11685973 |
atgcatataagg |
11685962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 13060 - 13309
Alignment:
| Q |
17 |
aagcataacttggagatacatactctaactgttgcacctagaggattaaccnnnnnnncacattcatgatggtaatgtaattcgttgccgaggaattcaa |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
13060 |
aagcataacttgcagatacatactctaactgttgcacctagatgattaacaaaaataacacattcgtgatggtaatgtaattcgtttccgaggaattcaa |
13159 |
T |
|
| Q |
117 |
atgcatataaggnnnnnnnntac--tataaaataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgca |
214 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13160 |
atgcatataaggaaaaaaaaaacactataaaatacaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgca |
13259 |
T |
|
| Q |
215 |
tccttttggctgttcttgtacaatccgccatcaagtaagattgtgcaacc |
264 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
13260 |
tccttttggatgttcttgtacaatccaccatcaagtaagattgtgcaacc |
13309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 7055272 - 7055521
Alignment:
| Q |
17 |
aagcataacttggagatacatactctaactgttgcacctagaggattaaccnnnnnnn-cacattcatgatggtaatgtaattcgttgccgaggaattca |
115 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
7055272 |
aagcataacttgaagatacatacgctaactgctgcacctagaggattaacaaaaaaaaacacattcgtgatggtaatgtaattcgttcccgaggaattca |
7055371 |
T |
|
| Q |
116 |
aatgcatataaggnnnnnnnnt-actataaaataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgca |
214 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7055372 |
aatgcatataaggaaaaaaaaacactataaaatacaacatctatgaagccagttctactatatatgtgtccacggtagtcttagttcttaagtaattgca |
7055471 |
T |
|
| Q |
215 |
tccttttggctgttcttgtacaatccgccatcaagtaagattgtgcaacc |
264 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7055472 |
tccttttggttgttcttgtacaatccgccatcaagtaagattgtgcaacc |
7055521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 14463093 - 14463345
Alignment:
| Q |
17 |
aagcataacttggagatacatactctaactgttgcacctagaggattaaccnnnnnnn----cacattcatgatggtaatgtaattcgttgccgaggaat |
112 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
14463093 |
aagcataacttgcagatacat---ctaactgttgcacctagaggattaacaaaaaaaaaaaacacattcgtgatggtaatgtaattcgttcccgaggaat |
14463189 |
T |
|
| Q |
113 |
tcaaatgcatataaggnnnnnnnntactataaaataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattg |
212 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14463190 |
tcaaatgaatataaggaaaaaaac-actataaaatacaacatctatgaagccacttctactatatatgtgtccacggtagtcttagtttttaagtaattg |
14463288 |
T |
|
| Q |
213 |
catccttttggctgttcttgtacaatccgccatcaagtaagattgtgcaaccagcaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14463289 |
tatccttttggctgttcttgtacaatccgccatcaagtaaaattgtgcaaccagcaa |
14463345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 38979859 - 38979614
Alignment:
| Q |
17 |
aagcataacttggagatacatactctaactgttgcacctagaggattaaccnnnnnnn-cacattcatgatggtaatgtaattcgttgccgaggaattca |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
38979859 |
aagcataacttgcagatacatactctaactgtcgcacctagaggattaacaaaaaaaaacacattcgtgatggtaatgtaattcattctcgaggaattca |
38979760 |
T |
|
| Q |
116 |
aatgcatataaggnnnnnnnntactataaaataaaacatctatgaagccacttctactatatatgtgtccacggtagtcttagttcttaagtaattgcat |
215 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38979759 |
aatgcatataaggaaaaaac--actataaaatacaacatctatgaagctacttctactatatatgtgtccacggtagtcttagtacttaagtaattgcat |
38979662 |
T |
|
| Q |
216 |
cctttt-ggctgttcttgtacaatccgccatcaagtaagattgtgcaa |
262 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38979661 |
ccttttgggctgttcttgtacaatccgacatcaagtaagattgtgcaa |
38979614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 24999003 - 24998892
Alignment:
| Q |
17 |
aagcataacttggagatacatactctaactgttgcacctagaggattaaccnnnnnnncacattcatgatggtaatgtaattcgttgccgaggaattcaa |
116 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| ||| | |||| ||||| |
|
|
| T |
24999003 |
aagcataacttgcatatatatactctaactgttgcacatagaggattaaccaaaaaagcacattcatgatggtaatataatttgttcctaaggagttcaa |
24998904 |
T |
|
| Q |
117 |
atgcatataagg |
128 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24998903 |
atgcatataagg |
24998892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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