View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_high_5 (Length: 569)
Name: NF15982_high_5
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 225 - 520
Target Start/End: Complemental strand, 33252114 - 33251816
Alignment:
| Q |
225 |
tatattgcttccttagataaaactataatccaaaattaaaaatattaatatt---tccatctttcacttgttcaactccttctagtctcaaatttacttt |
321 |
Q |
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| T |
33252114 |
tatattgcttccttagataaaactataatccaaaattaaaaatattaatattctttccatctttcacttgttcaactccttctagtctcaaatttacttt |
33252015 |
T |
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| Q |
322 |
agatattttgatcatctttgcactgagttttctatgtataatacactaaggctccatttgagtggacgggaagtgagggcttgtaaataaaggaagtagg |
421 |
Q |
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| T |
33252014 |
agatattttgatcatctttgcactgagtttcctatgtataatacattaaggctccatttgagtggacgggaagtgagggcttgtaaataaaggaagtagt |
33251915 |
T |
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| Q |
422 |
ggaaagaacggatatcttagagaaatgattttactcgttagttgattatcttttccattcaatgatatcataatatttccacataaaaaggaaacaaat |
520 |
Q |
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| T |
33251914 |
ggaaagaaaggatatcttagagaaatgattttactcgttagttgattatcttttccattcaatgatatcataatatttccacataaaaaggaagcaaat |
33251816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 33252364 - 33252113
Alignment:
| Q |
19 |
actcccaaggttattggccacaatgaaccaagtttataaagattactgataaacctcaatgcaaatataattgcaacatcctatattttgagtagaatga |
118 |
Q |
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| T |
33252364 |
actcccaaggttattggccacaatgaaccaagtttataaagattactgataaacctcaatgcaaatataattgcaacatcctata--ttgagtagaatga |
33252267 |
T |
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| Q |
119 |
ctccttttcttaactcgtgagtttcatatgacgatattccaatagatcgaaagccttaccc-ttccttatcactacaaaatttcaagatataacttcttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
33252266 |
ctccttttcttaactcgtgagtttcatatgacgatattcgaatagatcgaaagccttaccctttccttatcactgcaaaatttcaagatataacttcttt |
33252167 |
T |
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| Q |
218 |
aattcaatatattgcttccttagataaaactataatccaaaattaaaaatatta |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33252166 |
aattcaatatattgcttccttagataaaactataatccaaaattaaaaatatta |
33252113 |
T |
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