View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15982_high_50 (Length: 250)

Name: NF15982_high_50
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15982_high_50
NF15982_high_50
[»] chr1 (12 HSPs)
chr1 (1-238)||(14467643-14467880)
chr1 (1-238)||(14481825-14482062)
chr1 (1-232)||(14522665-14522896)
chr1 (13-232)||(15010852-15011071)
chr1 (42-232)||(15001988-15002178)
chr1 (42-232)||(15016996-15017186)
chr1 (24-232)||(14532786-14532994)
chr1 (42-232)||(15024998-15025188)
chr1 (42-232)||(15032339-15032529)
chr1 (42-232)||(15036901-15037091)
chr1 (24-227)||(14503845-14504048)
chr1 (14-203)||(15040612-15040801)
[»] scaffold0400 (2 HSPs)
scaffold0400 (13-232)||(6343-6562)
scaffold0400 (24-232)||(12642-12850)
[»] scaffold0365 (2 HSPs)
scaffold0365 (13-232)||(6987-7206)
scaffold0365 (24-232)||(13285-13493)
[»] chr7 (5 HSPs)
chr7 (175-225)||(14605912-14605962)
chr7 (175-225)||(16025089-16025139)
chr7 (175-224)||(16102894-16102943)
chr7 (175-224)||(16172571-16172620)
chr7 (77-224)||(17848447-17848594)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14467643 - 14467880
Alignment:
Q  1 ttaagtggttcaatcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14467643 ttaagtggttcaatcccaaaacaacttggaagtttgtcaatgttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcgagtttg 14467742  T
Q  101 gccaattaaatgttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaa 200  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||  |||| |||||||||||    
T  14467743 gccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaacattgaa 14467842  T
Q  201 tctctcacataataatctttctggtaccattctcttca 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14467843 tctctcacataataatctttctggtaccattctcttca 14467880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14481825 - 14482062
Alignment:
Q  1 ttaagtggttcaatcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14481825 ttaagtggttcaatcccaaaacaacttggaagtttgtcaatgttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcgagtttg 14481924  T
Q  101 gccaattaaatgttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaa 200  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||  |||| |||||||||||    
T  14481925 gccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaacattgaa 14482024  T
Q  201 tctctcacataataatctttctggtaccattctcttca 238  Q
    |||||||||||||||||||||||||||||||| |||||    
T  14482025 tctctcacataataatctttctggtaccattcccttca 14482062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14522896 - 14522665
Alignment:
Q  1 ttaagtggttcaatcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttg 100  Q
    ||||||||||  |||||  || |||||||||| ||||| | ||||||||| |||||||| ||| |||||| ||||||||||||||||||||||||  |||    
T  14522896 ttaagtggttttatccctgaaaaacttggaaggttgtctaggttattgcagttgaatttgagccaaaataagtttgaaggaaacattcctgttgaacttg 14522797  T
Q  101 gccaattaaatgttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaa 200  Q
    | ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||  ||||| | || ||||||||   ||| |||||||||||    
T  14522796 gtcaattgaatgttattgaagatcttgatcttagcgggaattttttgaatggaaccataccaacaatgcttggacagttaaatcgcttagaaacattgaa 14522697  T
Q  201 tctctcacataataatctttctggtaccattc 232  Q
    |||||||||||||||||| | ||||| |||||    
T  14522696 tctctcacataataatctctatggtaacattc 14522665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 15010852 - 15011071
Alignment:
Q  13 atcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatg 112  Q
    ||||| ||| ||||||| |  ||||| | ||||||||| || ||||| ||| |||||| |||||| || |||||||||||||||||||||||||| ||||    
T  15010852 atccctaaaaaacttggtatgttgtctatgttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgttgagtttggccaattgaatg 15010951  T
Q  113 ttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataa 212  Q
    |||||||| ||||||||||||| | ||||| | |||| |||||||| || |||||| | || ||||||||  |||| |||||||||||||||||||||||    
T  15010952 ttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataa 15011051  T
Q  213 taatctttctggtaccattc 232  Q
     ||||| |||||||||||||    
T  15011052 caatctctctggtaccattc 15011071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 15001988 - 15002178
Alignment:
Q  42 gttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaat 141  Q
    ||||||||| || ||||| ||| |||||| |||||| || |||||||||||||||||||||||||| |||||||||||| | ||||||||||| | ||||    
T  15001988 gttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaat 15002087  T
Q  142 tttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctggtaccattc 232  Q
    | | |||| |||||||| || |||||| | || ||||||||  |||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  15002088 tctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattc 15002178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 15016996 - 15017186
Alignment:
Q  42 gttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaat 141  Q
    ||||||| | || ||||| ||| |||||| |||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||    
T  15016996 gttattgaagttaaatttgagccaaaataagtttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaat 15017095  T
Q  142 tttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctggtaccattc 232  Q
    | | |||| |||||||| || |||||| | || ||||||||  |||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  15017096 tctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattc 15017186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 14532994 - 14532786
Alignment:
Q  24 acttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagat 123  Q
    ||||||||| |||||  ||||| | || |||||||| ||| |||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  14532994 acttggaaggttgtctgagttaatacatttgaatttgagccaaaataagttcgaaggaaacattcctgttgagtttgaccaattaaaggttattgaagat 14532895  T
Q  124 cttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctg 223  Q
    ||||||||||| || ||| || |||  |||||||| ||  ||||| | || ||||||||  ||||  ||||||||||||| |||||||||||||||||||    
T  14532894 cttgatcttagtgaaaatgttatgagtggaaccataccatcaatgcttggacagttaaatcacttacaaacattgaatctttcacataataatctttctg 14532795  T
Q  224 gtaccattc 232  Q
    | |||||||    
T  14532794 gaaccattc 14532786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 15024998 - 15025188
Alignment:
Q  42 gttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaat 141  Q
    ||||||||| || ||||| ||| |||||| |||||| || |||||||||| |||||||| |||||| |||||||||||| ||||||||||||| | ||||    
T  15024998 gttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaat 15025097  T
Q  142 tttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctggtaccattc 232  Q
    ||| |||| |||||||| ||  ||||| | |||||||||||   ||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  15025098 tttatgaatggaaccataccatcaatgcttgggcagttaaatcgcttagaaacattgaatctctcacataacaatctctctggtaccattc 15025188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 15032339 - 15032529
Alignment:
Q  42 gttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaat 141  Q
    ||||||||| || ||||| ||| |||||| |||||| || |||||||||| |||||||| |||||| |||||||||||| ||||||||||||| | ||||    
T  15032339 gttattgcagttaaatttgagccaaaataagtttgaggggaacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaat 15032438  T
Q  142 tttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctggtaccattc 232  Q
    ||| |||| |||||||| ||  ||||| | |||||||||||   ||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  15032439 tttatgaatggaaccataccatcaatgcttgggcagttaaatcgcttagaaacattgaatctctcacataacaatctctctggtaccattc 15032529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 15036901 - 15037091
Alignment:
Q  42 gttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaat 141  Q
    ||||||||| |||||||| ||| | |||| | |||| || |||||||||||||||||||||||||| |||||||||||| | ||||||||||| | ||||    
T  15036901 gttattgcagttgaatttgagccataataagcttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaat 15037000  T
Q  142 tttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctggtaccattc 232  Q
    | | |||| |||||||| || |||||| | || ||||||||  |||| ||||||||||||||||||||||| ||||| |||||||||||||    
T  15037001 tctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattc 15037091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 14503845 - 14504048
Alignment:
Q  24 acttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagat 123  Q
    ||||||||| |||||  ||||| | || |||||||| ||| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  14503845 acttggaaggttgtctgagttaatacatttgaatttgagccaaaataagtttgaaggaaacattcccgttgagtttggccgattaaatgttattgaagat 14503944  T
Q  124 cttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctg 223  Q
    |||||||| || |  |||||| |||| ||||| || ||  ||||||| ||   ||||||  | || ||||||||||||||||||||||||||||| ||||    
T  14503945 cttgatctcagtggaaattttatgaatggaacgataccttcaatgtttggagtgttaaatcatttagaaacattgaatctctcacataataatctgtctg 14504044  T
Q  224 gtac 227  Q
    ||||    
T  14504045 gtac 14504048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 15040612 - 15040801
Alignment:
Q  14 tcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgt 113  Q
    ||||||||||||||||||| || || | |||||| ||||| ||| | ||| |||||| |||||||||||||||||||| |||| |||| || ||||| ||    
T  15040612 tcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaaggaaacattcctgatgagattggacagttaaaagt 15040711  T
Q  114 tattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatct 203  Q
    ||||||| ||||||||||||| | ||||| |||||| |||||||| ||  ||||| | || ||||||||   ||| ||||||||||||||    
T  15040712 tattgaaaatcttgatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagttaaatcgcttagaaacattgaatct 15040801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 6343 - 6562
Alignment:
Q  13 atcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatg 112  Q
    |||||| ||||||||||||| ||  | || |||||| |||||||||| ||| |||||| |||||||||| ||||||||| ||||||||| ||||| ||      
T  6343 atcccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtttgaaggagacattcctgctgagtttggacaattgaaaa 6442  T
Q  113 ttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataa 212  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||| ||  ||||| | ||  |||||||   ||| |||||||||||||||||||||||    
T  6443 ttattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagttaaatcgcttagaaacattgaatctctcacataa 6542  T
Q  213 taatctttctggtaccattc 232  Q
    |||| |||||||||||||||    
T  6543 taatttttctggtaccattc 6562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 12642 - 12850
Alignment:
Q  24 acttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagat 123  Q
    ||||||||| |||||  ||||| | || |||||||| ||| |||||| ||||||||||||||||||  ||||||||||||||||| | ||||||||||||    
T  12642 acttggaaggttgtctgagttaatacatttgaatttgagccaaaataggtttgaaggaaacattcccattgagtttggccaattagaagttattgaagat 12741  T
Q  124 cttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctg 223  Q
    ||||| ||||| |  |||||||||||||||||||| ||  ||||| | || ||||||||  || |  ||||||||||||| |||||||||||||||||||    
T  12742 cttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaacattgaatctttcacataataatctttctg 12841  T
Q  224 gtaccattc 232  Q
    | |||||||    
T  12842 gaaccattc 12850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 6987 - 7206
Alignment:
Q  13 atcccaaaacaacttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatg 112  Q
    |||||| ||||||||||||| ||  | || |||||| |||||||||| ||| |||||| |||||||||| ||||||||| ||||||||| ||||| ||      
T  6987 atcccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtttgaaggagacattcctgctgagtttggacaattgaaaa 7086  T
Q  113 ttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataa 212  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||| ||  ||||| | ||  |||||||   ||| |||||||||||||||||||||||    
T  7087 ttattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagttaaatcgcttagaaacattgaatctctcacataa 7186  T
Q  213 taatctttctggtaccattc 232  Q
    |||| |||||||||||||||    
T  7187 taatttttctggtaccattc 7206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 13285 - 13493
Alignment:
Q  24 acttggaagtttgtcaaagttattgcacttgaatttaagcaaaaatatgtttgaaggaaacattcctgttgagtttggccaattaaatgttattgaagat 123  Q
    ||||||||| |||||  ||||| | || |||||||| ||| |||||| ||||||||||||||||||  ||||||||||||||||| | ||||||||||||    
T  13285 acttggaaggttgtctgagttaatacatttgaatttgagccaaaataggtttgaaggaaacattcccattgagtttggccaattagaagttattgaagat 13384  T
Q  124 cttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggcagttaaaatacttggaaacattgaatctctcacataataatctttctg 223  Q
    ||||| ||||| |  |||||||||||||||||||| ||  ||||| | || ||||||||  || |  ||||||||||||| |||||||||||||||||||    
T  13385 cttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaacattgaatctttcacataataatctttctg 13484  T
Q  224 gtaccattc 232  Q
    | |||||||    
T  13485 gaaccattc 13493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 14605912 - 14605962
Alignment:
Q  175 cagttaaaatacttggaaacattgaatctctcacataataatctttctggt 225  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  14605912 cagttgaaatacttggaaacattgaatatctcacataataatctttctggt 14605962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 16025089 - 16025139
Alignment:
Q  175 cagttaaaatacttggaaacattgaatctctcacataataatctttctggt 225  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  16025089 cagttgaaatacttggaaacattgaatatctcacataataatctttctggt 16025139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 16102894 - 16102943
Alignment:
Q  175 cagttaaaatacttggaaacattgaatctctcacataataatctttctgg 224  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  16102894 cagttgaaatacttggaaacattgaatatctcacataataatctttctgg 16102943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 16172571 - 16172620
Alignment:
Q  175 cagttaaaatacttggaaacattgaatctctcacataataatctttctgg 224  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  16172571 cagttgaaatacttggaaacattgaatatctcacataataatctttctgg 16172620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 17848447 - 17848594
Alignment:
Q  77 aaggaaacattcctgttgagtttggccaattaaatgttattgaagatcttgatcttagcgagaattttttgaacggaaccattccggcaatgttggggca 176  Q
    ||||||| ||||||||||||||||||||||| || ||  || ||  |||||||||||| | ||||||| | |||||||| || ||| ||| | | |  ||    
T  17848447 aaggaaatattcctgttgagtttggccaatttaaagtccttcaaagtcttgatcttagtgggaattttctcaacggaacaataccgtcaacgcttgctca 17848546  T
Q  177 gttaaaatacttggaaacattgaatctctcacataataatctttctgg 224  Q
      | | |||||| ||| |||||||| | ||||||||||| ||||||||    
T  17848547 actgatatacttagaatcattgaatatatcacataataacctttctgg 17848594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University