View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15982_high_53 (Length: 244)

Name: NF15982_high_53
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15982_high_53
NF15982_high_53
[»] scaffold0400 (2 HSPs)
scaffold0400 (1-228)||(12149-12376)
scaffold0400 (1-110)||(5979-6088)
[»] scaffold0365 (2 HSPs)
scaffold0365 (1-228)||(12792-13019)
scaffold0365 (1-110)||(6623-6732)
[»] chr1 (11 HSPs)
chr1 (1-177)||(14503403-14503579)
chr1 (1-177)||(14533260-14533436)
chr1 (3-112)||(14523141-14523250)
chr1 (1-190)||(15001515-15001704)
chr1 (1-190)||(15010408-15010597)
chr1 (1-190)||(15016523-15016712)
chr1 (1-112)||(15036506-15036617)
chr1 (1-177)||(14467224-14467400)
chr1 (1-190)||(15024525-15024714)
chr1 (1-190)||(15031866-15032055)
chr1 (1-112)||(15040242-15040353)
[»] scaffold0289 (1 HSPs)
scaffold0289 (131-179)||(18761-18809)
[»] chr7 (4 HSPs)
chr7 (131-179)||(15665893-15665941)
chr7 (141-199)||(14605297-14605355)
chr7 (18-112)||(17848017-17848111)
chr7 (39-112)||(16024567-16024640)


Alignment Details
Target: scaffold0400 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 12376 - 12149
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12376 tgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaccatc 12277  T
Q  101 tgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattattg 200  Q
    |||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12276 tgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattattg 12177  T
Q  201 gatgcggtgaaccaatataaatttccac 228  Q
    ||||| |||||||||||||| |||||||    
T  12176 gatgcagtgaaccaatataactttccac 12149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 6088 - 5979
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||||||||||||||| ||||||||||| || | ||| |||||||||||||||||||| |||||||| ||  ||||||  ||||| ||||||||   |||    
T  6088 tgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacaccaaagctatc 5989  T
Q  101 tgttatattt 110  Q
    ||||||||||    
T  5988 tgttatattt 5979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 13019 - 12792
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13019 tgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaccatc 12920  T
Q  101 tgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattattg 200  Q
    |||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12919 tgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattattg 12820  T
Q  201 gatgcggtgaaccaatataaatttccac 228  Q
    ||||| |||||||||||||| |||||||    
T  12819 gatgcagtgaaccaatataactttccac 12792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 6732 - 6623
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||||||||||||||| ||||||||||| || | ||| |||||||||||||||||||| |||||||| ||  ||||||  ||||| ||||||||   |||    
T  6732 tgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacaccaaagctatc 6633  T
Q  101 tgttatattt 110  Q
    ||||||||||    
T  6632 tgttatattt 6623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 14503579 - 14503403
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    ||||| |||||||||| |||||||||||||||| ||||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  14503579 tgagactcttgcactttccccaatttggtgatagatggccatacaaattattttcactcaattccatgtagtccaaatgtggataaacaccaaaaccatc 14503480  T
Q  101 tgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaa 177  Q
    |||||||||||| |||||||||       |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  14503479 tgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattctttaaactctttggaa 14503403  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 14533260 - 14533436
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| || |||||  ||||    
T  14533260 tgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcactcaattccatgtagtccaaatttggatacacgccaaaggcatc 14533359  T
Q  101 tgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaa 177  Q
     ||||||||  | |||| ||||       |||| || ||||| ||||| |||||||| |||||||||||| ||||||    
T  14533360 agttatattgtcagttatttgattttgttgaagtcttactctgataagactggagcacttcttcaaactctttggaa 14533436  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 14523141 - 14523250
Alignment:
Q  3 agattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctg 102  Q
    |||||||||||||| ||||||||||| || | ||  |||||||||||||||||||||||||| |||||| |||||| |||||| |||||||||  |||||    
T  14523141 agattcttgcacttcccccaatttggagaaagataaccataaaaattattatcacttaattctatgtagtccaaatttggatacacaccaaaactatctg 14523240  T
Q  103 ttatatttcc 112  Q
    ||||||||||    
T  14523241 ttatatttcc 14523250  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 15001704 - 15001515
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||||||||||||||| ||||||||||| || | ||| |||||||||||||||||||| || ||||||||  |||||| |||||| ||||||||    ||    
T  15001704 tgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcactcaaatccatgtattccaaatttggatacacaccaaagctgtc 15001605  T
Q  101 tgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaa 190  Q
    |||||||||||| || | |||        |||| || |||||  ||||||| ||||||||||||||||||  ||||||||  ||||||||    
T  15001604 tgttatatttccagtcagttggttttgttgaagtctcactctcgtaaggcttgagcaattcttcaaactctctggaactaggcctgtgaa 15001515  T

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Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 15010597 - 15010408
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    ||||| |||||||||| ||||||||||| || | ||| |||||||||||||||||||| |||||||||||| |||| | |||||| |||||||||   ||    
T  15010597 tgagaatcttgcactttccccaatttggagaaagatgaccataaaaattattatcactcaattccatgtagtccaagtttggatacacaccaaaactctc 15010498  T
Q  101 tgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaa 190  Q
    |||||||||||| || | |||         |||||| | |||  ||||||| ||||||||||||||||||  ||||||||  ||||||||    
T  15010497 tgttatatttccagtaagttggttttgatcaagcctcagtctcgtaaggcttgagcaattcttcaaactctctggaactaggcctgtgaa 15010408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 15016712 - 15016523
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||||||||||||||| ||||||||||| || || || ||||| |||||||||||||| |||||||||||| |||| | |||||| |||||||||  ||     
T  15016712 tgagattcttgcactttccccaatttggagaaatttgaccatacaaattattatcactcaattccatgtagtccaagtttggatacacaccaaaactatt 15016613  T
Q  101 tgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaa 190  Q
    |||||||||||| || | |||         |||||| | |||  ||||||| ||||||||||||||||||  ||||||||  ||||||||    
T  15016612 tgttatatttccagtcagttggttttgttcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaa 15016523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 15036617 - 15036506
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||||||||||||||| ||||||||||| || | ||| |||||||||||||||||||| || ||||||||| |||| | |||||| |||||||||   ||    
T  15036617 tgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctc 15036518  T
Q  101 tgttatatttcc 112  Q
    ||||||||||||    
T  15036517 tgttatatttcc 15036506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 14467400 - 14467224
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||||||| |||| || |||||||| ||||||| ||||||||| |||||||||||||| |||||||||||| |||| | |||||  || |||||  ||||    
T  14467400 tgagattcatgcattttccccaattcggtgatagatggccatacaaattattatcactcaattccatgtagtccaattttggatgcacgccaaaggcatc 14467301  T
Q  101 tgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaa 177  Q
     ||||||||  | |||| ||||       ||||||| ||||||  |||||| ||||| |||||||||||| ||||||    
T  14467300 agttatattgtcagttagttgattttgttgaagccttactctataaaggctagagcagttcttcaaactctttggaa 14467224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 15024714 - 15024525
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||||||||||||||| ||||||||||| || | ||| |||||||||||||||||| | || |||||||||  ||| | |||||| |||||||||  ||     
T  15024714 tgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcattcaagtccatgtagtacaagtttggatacacaccaaaactatt 15024615  T
Q  101 tgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaa 190  Q
    |||||||||||| || | |||         |||||| |||||  |||||||  |||||||||||||||||  ||||||||| || |||||    
T  15024614 tgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttcaaactctctggaactaagccagtgaa 15024525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 15032055 - 15031866
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    |||||||||||||||| ||||||||||| || | ||| |||||||||||||||||| | || |||||||||  ||| | |||||| |||||||||  ||     
T  15032055 tgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcattcaagtccatgtagtacaagtttggatacacaccaaaactatt 15031956  T
Q  101 tgttatatttccggttaattgannnnnnngaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaa 190  Q
    |||||||||||| || | |||         |||||| |||||  |||||||  |||||||||||||||||  ||||||||| || |||||    
T  15031955 tgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaattcttcaaactctctggaactaagccagtgaa 15031866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 15040353 - 15040242
Alignment:
Q  1 tgagattcttgcacttaccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatc 100  Q
    ||||||||||||  || |||||||| ||||| ||||||||| || | |||||| |||| ||||||||||||  ||| | |||| | ||||||||   |||    
T  15040353 tgagattcttgcgttttccccaattaggtgaaatatggccaaaatatttattaccactcaattccatgtagtacaagtttggacacacaccaaagctatc 15040254  T
Q  101 tgttatatttcc 112  Q
    ||||||||||||    
T  15040253 tgttatatttcc 15040242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 18761 - 18809
Alignment:
Q  131 aagcctaactctaataaggctggagcaattcttcaaactcattggaact 179  Q
    |||||||| |||||||||||| |||||||||||||||||  ||||||||    
T  18761 aagcctaagtctaataaggctagagcaattcttcaaactttttggaact 18809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 15665893 - 15665941
Alignment:
Q  131 aagcctaactctaataaggctggagcaattcttcaaactcattggaact 179  Q
    |||||||| |||||||||||| |||||||||||||||||  ||||||||    
T  15665893 aagcctaagtctaataaggctagagcaattcttcaaactttttggaact 15665941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 14605355 - 14605297
Alignment:
Q  141 ctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaaatgattatt 199  Q
    ||||||| ||| |||||||||||||||||| |||||||| | |||||||| || |||||    
T  14605355 ctaataatgctagagcaattcttcaaactctttggaactgagcctgtgaagtggttatt 14605297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 17848111 - 17848017
Alignment:
Q  18 ccccaatttggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttcc 112  Q
    ||||| || ||||| || ||||||||||||||||| | ||| || | ||||||  ||||||  ||||| |||||||| | |||||||||||||||    
T  17848111 ccccagttcggtgaaatctggccataaaaattattttgactcaaatgcatgtaatccaaattcggatacacaccaaagaaatctgttatatttcc 17848017  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 16024640 - 16024567
Alignment:
Q  39 ccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaacatctgttatatttcc 112  Q
    ||||||||||| || | |||||||| |||||| ||||||| |||||| ||||||||  | || |||||||||||    
T  16024640 ccataaaaattgttttgacttaattgcatgtaaaccaaatctggatatacaccaaagtcttcggttatatttcc 16024567  T

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