View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_10 (Length: 434)
Name: NF15982_low_10
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 41037233 - 41036836
Alignment:
| Q |
16 |
taactaacaactgtttttcctggaatgggatcatgattcatcaataagtctggtggtaaattcattcaaccttaaaatatgtatgcagtgtatgtttact |
115 |
Q |
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| T |
41037233 |
taactaacaactgtttttcctggaatgggatcatgattcatcaataagtccggtggtaaattcattcaaccttaaaatatgtatgcagtgtatgtttact |
41037134 |
T |
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| Q |
116 |
ttcatttttggaggagacaaaattgttactgaaggtgtaaacttgattttcatatatttgaatgttctcaagtaaaattaatttttactagaagctagaa |
215 |
Q |
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| T |
41037133 |
ttcatttttggaggagacaaaattgttactgaaggtgtaaacttgattttcatatatttgaatgttctcaagtaaaattaatttttactagaagctagaa |
41037034 |
T |
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| Q |
216 |
---------tttacctctgcaattagtttttaccctttaatctattgttcaaccataaatgtatctaaacatattttttgtcacggaagtacaaaataca |
306 |
Q |
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| T |
41037033 |
ttcagaccttttacctctgcaattagtttttaccctttaatctattgttcaaccataaatgtatctaaacatattttttgtcacggaagaacaaaataca |
41036934 |
T |
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| Q |
307 |
cacaaaatcatgataaaacttgtcaaggaacatgaacatgtgatatatcatattcttagcaactgctgagagaaataagtgtcgcataccagtattat |
404 |
Q |
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| T |
41036933 |
cacaaaatcatgataaaacttgtcaaggaacatgaacatgtgatatatcatattcttagcaactgctgagagaaataagtgtcgcataccagtattat |
41036836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 41031725 - 41031689
Alignment:
| Q |
16 |
taactaacaactgtttttcctggaatgggatcatgat |
52 |
Q |
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| T |
41031725 |
taactaacaactgtttttcctggaatgcgatcatgat |
41031689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 41031423 - 41031362
Alignment:
| Q |
297 |
acaaaatacacacaaaatcatgataaaacttgtcaaggaacatgaacatgtgatatatcata |
358 |
Q |
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|||||| | ||||||||||| |||||||||||||| |||| |||||||||||| |||||| |
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| T |
41031423 |
acaaaacagacacaaaatcaggataaaacttgtcatagaactagaacatgtgatacatcata |
41031362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 41031651 - 41031614
Alignment:
| Q |
47 |
catgattcatcaataagtctggtggtaaattcattcaa |
84 |
Q |
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| T |
41031651 |
catgattcatcaacaagtctggtgataaattcattcaa |
41031614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 2410125 - 2410026
Alignment:
| Q |
102 |
agtgtatgtttactttcatttttggaggagacaaaattgttactgaaggtgt-aaacttgattttcatatatttgaatgttctcaagtaaaattaatttt |
200 |
Q |
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||||||||||| ||||| |||||| |||| |||||||||| || ||||||| ||| || ||||| | || |||| ||||||||||||| |||| ||||| |
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| T |
2410125 |
agtgtatgtttgatttcacttttggtggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt |
2410026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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