View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_12 (Length: 427)
Name: NF15982_low_12
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 34142479 - 34142874
Alignment:
| Q |
14 |
agacaacatttattaggtcaaaagtccataaaactataatgttttggtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttca |
113 |
Q |
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| T |
34142479 |
agacaacatttattaggtcaaaagtccataaaactataatgttt-ggtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttca |
34142577 |
T |
|
| Q |
114 |
caaga-cccactgttgatctgttttccgcttcacttcaagtcctccaacctcatcttgggcaagaatagttaaggcaccagaatccttatgtggaccagc |
212 |
Q |
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| T |
34142578 |
caagaacccactgttgatctgttttccgcttcacttcaagtcctccaacctcatcttgggcaagaatagttaaggcaccagaatccttatgtggaccagc |
34142677 |
T |
|
| Q |
213 |
accaagagcaaggtgagggtaagggcatggaggataatggttaagtctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttca |
312 |
Q |
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| T |
34142678 |
accaagagcaaggtgagggtaagggcatggaggataatggttaagtctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttca |
34142777 |
T |
|
| Q |
313 |
actcctaagctaagagctatgagctctagcaacgtaaaggctagcttttccatctctttaatatactctataagaataacactgcaatgctcataat |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
34142778 |
actcctaagctaagagctatgagctctagcaacgtaaaggctagcttttccatctctttaatatactctttaagaataactctgcaatgctcataat |
34142874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 60 - 381
Target Start/End: Original strand, 34131029 - 34131348
Alignment:
| Q |
60 |
gtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcacaaga-cccactgttgatctgttttccgcttcacttcaagtcctcc |
158 |
Q |
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| T |
34131029 |
gtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcctcc |
34131128 |
T |
|
| Q |
159 |
aacctcatcttgggcaagaatagttaaggcaccagaatccttatgtggaccagcaccaagagcaaggtgagggtaagggcatggaggataatggttaagt |
258 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||| | ||| | ||||| || |||||||||||||||||||||||||| ||||| | | |
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| T |
34131129 |
aacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtggttgaat |
34131228 |
T |
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| Q |
259 |
ctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttcaactcctaagctaagagctatgagctctagcaacgtaaaggctagct |
358 |
Q |
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|||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||| || | || |||| |
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| T |
34131229 |
ctaataaagctagtttgatact---tgaagaattcttcaaacctctttgcttcaagtcctaagcttagagctattagctccagcaacctatatgccagct |
34131325 |
T |
|
| Q |
359 |
tttccatctctttaatatactct |
381 |
Q |
| |
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|||||| ||||| |||||||||| |
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| T |
34131326 |
tttccacctcttgaatatactct |
34131348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 60 - 381
Target Start/End: Original strand, 34136720 - 34137039
Alignment:
| Q |
60 |
gtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcacaaga-cccactgttgatctgttttccgcttcacttcaagtcctcc |
158 |
Q |
| |
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||||||| || | ||||| ||| || ||||| |||||||||| || |||||||||||| |||||| ||| || ||| ||||||||||||| || || |
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| T |
34136720 |
gtacctggataatatcacaaacgttgataatgtaagcatctgaggtaggtttcacaagaacccactcttgtgatgctttgtgcttcacttcaagaccccc |
34136819 |
T |
|
| Q |
159 |
aacctcatcttgggcaagaatagttaaggcaccagaatccttatgtggaccagcaccaagagcaaggtgagggtaagggcatggaggataatggttaagt |
258 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||| ||| | ||| | || ||||| |||||||||||||||||||||||||| ||||| | | |
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| T |
34136820 |
aacatcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgcccaacgccgagagctaggtgagggtaagggcatggaggatagtggttgaat |
34136919 |
T |
|
| Q |
259 |
ctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttcaactcctaagctaagagctatgagctctagcaacgtaaaggctagct |
358 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| | |||||| ||||| |||||| | | || | || |
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| T |
34136920 |
ctaataaagctagtgtgatctt---tgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagctcaagcaacttgtaagccaact |
34137016 |
T |
|
| Q |
359 |
tttccatctctttaatatactct |
381 |
Q |
| |
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|||||||||||| | |||||||| |
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| T |
34137017 |
tttccatctcttcattatactct |
34137039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 124 - 381
Target Start/End: Original strand, 34139943 - 34140197
Alignment:
| Q |
124 |
tgttgatctgttttccgcttcacttcaagtcctccaacctcatcttgggcaagaatagttaaggcaccagaatccttatgtggaccagcaccaagagcaa |
223 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| ||||||||| | ||| ||||||||| |||||||||| |||||| ||| ||| |||||||| | |
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| T |
34139943 |
tgttgatctgttttacgcttcacttcaagaccttcaacctcatttagggtaagaatagtcaaggcaccagcatccttgtgtcttccaaggccaagagcta |
34140042 |
T |
|
| Q |
224 |
ggtgagggtaagggcatggaggataatggttaagtctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttcaactcctaagct |
323 |
Q |
| |
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||||||||||||||||||||||||| | ||| | ||| | |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |
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| T |
34140043 |
ggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatact---tgaagaattcttcaaacctctttgcttcaagtcctaagct |
34140139 |
T |
|
| Q |
324 |
aagagctatgagctctagcaacgtaaaggctagcttttccatctctttaatatactct |
381 |
Q |
| |
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| |||||| ||||| | ||| || ||| |||||||||||||||| ||||||||| |
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| T |
34140140 |
taaagctataagctccaataacttacgggccagcttttccatctcttcgatatactct |
34140197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 381
Target Start/End: Original strand, 34125968 - 34126206
Alignment:
| Q |
140 |
gcttcacttcaagtcctccaacctcatcttgggcaagaatagttaaggcaccagaatccttatgtggaccagcaccaagagcaaggtgagggtaagggca |
239 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| ||| || |||||||| || | ||| |||| || |
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| T |
34125968 |
gcttcacttcaagaccagcaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcttcccatgccaagagctagctcaggagaaggaca |
34126067 |
T |
|
| Q |
240 |
tggaggataatggttaagtctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttcaactcctaagctaagagctatgagctct |
339 |
Q |
| |
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||||||||| || || | ||||| | ||||||| ||| | |||||||||||||||||||| ||||||||| |||||||| | |||||| | ||| |
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| T |
34126068 |
tggaggatagtgattgattctaaacacgctagttgtatcct---tgaagaattcttcaaacctcattgcttcaagccctaagctcaaagctattaactcc |
34126164 |
T |
|
| Q |
340 |
agcaacgtaaaggctagcttttccatctctttaatatactct |
381 |
Q |
| |
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|||||| || |||| | ||||||||||| |||||||||||| |
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| T |
34126165 |
agcaacttagaggccaaattttccatctccttaatatactct |
34126206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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