View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15982_low_13 (Length: 424)
Name: NF15982_low_13
Description: NF15982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15982_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 179 - 409
Target Start/End: Complemental strand, 35424480 - 35424250
Alignment:
| Q |
179 |
acatacgtttgcttaacccaaaaaatggccagcaaattatagaaaatacttagataatctcaacaattgaaccacctccacgacagaatttttatgtgac |
278 |
Q |
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| T |
35424480 |
acatacgtttgcttaacccaaaaaatggccagcaaattatagaaaatacttagataatctcaacaattgaaccacctccacgacagaatttttatgtgac |
35424381 |
T |
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| Q |
279 |
agaacaacagtaaaattagcaatatctacatggaaaagtatccgatttcgcatcatccacatggcctatactgcgagaaaccagattatgtgccaaatct |
378 |
Q |
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| T |
35424380 |
agaacaacagtaaaattagcaatctgtacatggaaaagtatccgatttcgcatcatccacagggcctataccacgagaaatcagattatgtgccaaatct |
35424281 |
T |
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| Q |
379 |
ttattaagcctccttcctctaagtgatgatc |
409 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35424280 |
ttattaagcctccttcctctaagtgatgatc |
35424250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 35424692 - 35424537
Alignment:
| Q |
18 |
aaaattttgctagtttgatagctgaagtgtatttctctacatatataacaatgctttaacaatgatgataagtttatggtgtaaattgcaagtaacaagg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35424692 |
aaaattttgctagtttgatagctgaagtgtatttctctatttggctaa--------taacaatgatgataagtttatggtgtaaattgcaagtaacaagg |
35424601 |
T |
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| Q |
118 |
accttttattttataaccaaatgaatttcattcataaagtacagtagatactctaacccttaca |
181 |
Q |
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| T |
35424600 |
accttttattttataaccaaatgaatttcattcataaagtacagtagatactctaacccttaca |
35424537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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